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Protein Overview: PP124_ARATH

General Information:
Name(s) found: PP124_ARATH [Swiss-Prot]
Description(s) found:
Found 14 descriptions.
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  • Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 862 amino acids

    Gene Ontology:
    Cellular Component: nucleoid [IDA]
    plastid chromosome [IDA]
    chloroplast [IDA]
    Biological Process: positive regulation of transcription, DNA-dependent [IMP]
    transcription from plastid promoter [IMP]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLAIPNPNS HHLSFLIQNS SFIGNRRFAD GNRLRFLSGG NRKPCSFSGK IKAKTKDLVL  60
   61 GNPSVSVEKG KYSYDVESLI NKLSSLPPRG SIARCLDIFK NKLSLNDFAL VFKEFAGRGD 120
  121 WQRSLRLFKY MQRQIWCKPN EHIYTIMISL LGREGLLDKC LEVFDEMPSQ GVSRSVFSYT 180
  181 ALINAYGRNG RYETSLELLD RMKNEKISPS ILTYNTVINA CARGGLDWEG LLGLFAEMRH 240
  241 EGIQPDIVTY NTLLSACAIR GLGDEAEMVF RTMNDGGIVP DLTTYSHLVE TFGKLRRLEK 300
  301 VCDLLGEMAS GGSLPDITSY NVLLEAYAKS GSIKEAMGVF HQMQAAGCTP NANTYSVLLN 360
  361 LFGQSGRYDD VRQLFLEMKS SNTDPDAATY NILIEVFGEG GYFKEVVTLF HDMVEENIEP 420
  421 DMETYEGIIF ACGKGGLHED ARKILQYMTA NDIVPSSKAY TGVIEAFGQA ALYEEALVAF 480
  481 NTMHEVGSNP SIETFHSLLY SFARGGLVKE SEAILSRLVD SGIPRNRDTF NAQIEAYKQG 540
  541 GKFEEAVKTY VDMEKSRCDP DERTLEAVLS VYSFARLVDE CREQFEEMKA SDILPSIMCY 600
  601 CMMLAVYGKT ERWDDVNELL EEMLSNRVSN IHQVIGQMIK GDYDDDSNWQ IVEYVLDKLN 660
  661 SEGCGLGIRF YNALLDALWW LGQKERAARV LNEATKRGLF PELFRKNKLV WSVDVHRMSE 720
  721 GGMYTALSVW LNDINDMLLK GDLPQLAVVV SVRGQLEKSS AARESPIAKA AFSFLQDHVS 780
  781 SSFSFTGWNG GRIMCQRSQL KQLLSTKEPT SEESENKNLV ALANSPIFAA GTRASTSSDT 840
  841 NHSGNPTQRR TRTKKELAGS TA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..207] MSA 1.586996 View MSA. No confident structure predictions are available.
    2 View Details [208..313] PSI-BLAST 7.0 No description for 2c0mA was found.
    3 View Details [314..698] PSI-BLAST 34.221849 The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
    4 View Details [699..777] PSI-BLAST 20.69897 No description for 3ceqA was found.
    5 View Details [778..862] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle