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Protein Overview: gi|6562307, gi|1...

General Information:
Name(s) found: gi|6562307 [NCBI NR]
gi|15241459 [NCBI NR]
gi|11357393 [NCBI NR]
gi|10176727 [NCBI NR]
Description(s) found:
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  • gi|6562307|emb|CAB62605.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15241459|ref|NP_196410.1| MCT2 (mei2 C-Terminal RRM only like 2); nucleic acid binding [Arabidopsis thaliana] [NCBI NR]
  • pir||T45618 hypothetical protein F13G24.130 - Arabidopsis thaliana [NCBI NR]
  • gi|10176727|dbj|BAB09957.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • (Q9SD91) Hypothetical protein (Similarity to ear1 protein) [athaliana3702.FASTAC.txt]
  • unnamed protein product [Arabidopsis thaliana]gi|6562307|emb|CAB62605.1| putative protein [Arabidopsis thaliana]gi|11357393|pir||T45618 hypothetical protein F13G24.130 - Arabidopsis thalianagi|15241459|ref|NP_196410.1| RNA recognition motif (RRM)-conta [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 RNA recognition motif (RRM)-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: MCT2 | MCT2 (mei2 C-Terminal RRM only like 2); nucleic acid binding | chr5:2530866-2532217 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • nucleic acid binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: MCT2 | MEI2 C-terminal RRM only like 2 | chr5:2530865-2532216 FORWARD LENGTH=282 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • MEI2 C-terminal RRM only like 2 OS=Arabidopsis thaliana GN=F13G24.130 PE=4 SV=1 [ARATH-contam.fasta]
  • Isoform of F4K9I2, MEI2 C-terminal RRM only like 2 OS=Arabidopsis thaliana GN=F13G24.130 PE=4 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 282 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: nucleic acid binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSDDPAPE NNHVSVLARQ ARNPPTHFFF PHNPSPRTYY FSAPPQIYFI SDIYLPPPPS  60
   61 IWVYYPLWYI NPNPNVYEST QELPQRYSPN PSQEMTLPPT SSRRVFGRRS YELCEKVTWR 120
  121 TSIKPEVESN GDHITTVMLR NIPNRYTREM MIQFMDKHCE EANKSGKNEE FTISAYDFIY 180
  181 LPIDFRTTMN KGYAFVNFTN AKAVSKFKAA CNNKPWCHFY SKKELEITYA RIQANELVKR 240
  241 FQHMTYPEEA YSAVCFSPAR SGGKDTVQTT MVGKCNEPVC SV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..80] deduced N/A No confident structure predictions are available.
    2 View Details [81..282] FFAS03 3.99 CG8781 protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.787118623292657 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.0269483316710413 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle