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Protein Overview: gi|25405826, gi|...

General Information:
Name(s) found: gi|25405826 [NCBI NR]
gi|15222709 [NCBI NR]
gi|12321612 [NCBI NR]
Description(s) found:
Found 11 descriptions.
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  • pir||B96596 hypothetical protein T18I3.4 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15222709|ref|NP_175935.1| DC1 domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|12321612|gb|AAG50851.1|AC079287_4 hypothetical protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 661 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPLPPYFSR AKPPCRLSDP AQPHMLCRRR RPSHPPLSIC FSCKGKQLKR NNYYYYCATC  60
   61 NLEFHRGCHI FLPEIRHPFH PSHPLTFISL LLPKFDVTKI PKNWMDSSSS SDESEDDDDD 120
  121 EKSIKEECED DGDDDDGDSS DSDDDDNNFD ANNDGASLSD GNHLKCKCCQ VPLEKIYYHC 180
  181 SICKFNLNVE CSMRPPPTTI SHLKSHEHIL TLFPIRLPLP CGACGLSLSD AEDLVYACLP 240
  241 CNLLVHRSCI YLPRVIKITR HPHRLSLTPS LQPGDFSCGV CRQTVDVNYG QYSCDKECHY 300
  301 AVHSKCATRN DVWDGKDLDG VPEEPDEFIE PPFLKIDEET IQHFSHHHHL KLHEKKTIGG 360
  361 KDKFCEACTL PVMISQRYYG CMQCDFVLDE TCASLPRKKN HPLHKHPLNL HILPLGESAM 420
  421 INKGATSKDI FQCIGCGRIG CGFFYKCDEK DCDEFLLDVR CASLPDPFVH DCHPHDHPLF 480
  481 FNLTKGNCMG CGSDNCSSYF LECIKCKSFL GIKCATLPCE AHYIHDRHPI TLCYGEEDTT 540
  541 SGQYWCEICE LKLDPKTWFY SCDFCKITLH VNCLLGEDIY LKPCHIFKVG LYYKEVEIAR 600
  601 NDGNSRLFCY TCELRCGQTL VFKYIGGCKS FCTLRCIGNY FDAKDGWVYD AARNLNIFRR 660
  661 I

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..130] MSA 1.110985 View MSA. No confident structure predictions are available.
    2 View Details [131..204] FFAS03 2.24 Solution Structure of DC1 Domain of PDI-like Hypothetical Protein from Arabidopsis thaliana
    3 View Details [205..348] PSI-BLAST 7.045757 Crystal Structure of the Human Beta2-Chimaerin
    4 View Details [349..474] FFAS03 2.13 Solution Structure of DC1 Domain of PDI-like Hypothetical Protein from Arabidopsis thaliana
    5 View Details [475..578] PSI-BLAST 5.39794 Solution Structure of DC1 Domain of PDI-like Hypothetical Protein from Arabidopsis thaliana
    6 View Details [579..661] deduced N/A Confident ab initio structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.0196698141692984 bayes_pls_golite062009
    3
    Term Confidence Notes
  • binding
    		•  0.0980674097362609 bayes_pls_golite062009
    4
    Term Confidence Notes
  • binding
    		•  0.0196698141692984 bayes_pls_golite062009
    5
    Term Confidence Notes
  • binding
    		•  0.0980674097362609 bayes_pls_golite062009
    6 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle