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Protein Overview: gi|18377438, gi|...

General Information:
Name(s) found: gi|9758703 [NCBI NR]
gi|79329893 [NCBI NR]
gi|62320496 [NCBI NR]
gi|51971895 [NCBI NR]
gi|18377438 [NCBI NR]
gi|15241519 [NCBI NR]
gi|14596137 [NCBI NR]
Description(s) found:
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  • gi|9758703|dbj|BAB09157.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • gi|79329893|ref|NP_001032011.1| small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative [Arabidopsis thaliana] [NCBI NR]
  • gi|62320496|dbj|BAD95039.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|51971895|dbj|BAD44612.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18377438|gb|AAL66885.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15241519|ref|NP_199263.1| small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative [Arabidopsis thaliana] [NCBI NR]
  • gi|14596137|gb|AAK68796.1| Unknown protein [Arabidopsis thaliana] [NCBI NR]
  • (Q9FI15) Similarity to small nuclear ribonucleoprotein (Unknown protein) (Hypothetical protein) [athaliana3702.FASTAC.txt]
  • unnamed protein product [Arabidopsis thaliana]gi|18377438|gb|AAL66885.1| unknown protein [Arabidopsis thaliana]gi|51971895|dbj|BAD44612.1| unknown protein [Arabidopsis thaliana]gi|14596137|gb|AAK68796.1| Unknown protein [Arabidopsis thaliana]gi|152415 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Small nuclear ribonucleoprotein associated protein B [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative | chr5:17944732-17945496 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Small nuclear ribonucleoprotein family protein | chr5:17927505-17928269 FORWARD LENGTH=254 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Small nuclear ribonucleoprotein-associated protein OS=Arabidopsis thaliana GN=MFC16.13 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 254 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ISS]
    nucleolus [IDA]
    small nucleolar ribonucleoprotein complex [ISS]
    Biological Process: NONE FOUND
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMSKSSKML QFINYRMRVT IQDGRQLIGK FMAFDRHMNL VLGDCEEFRK LPPAKGNKKT  60
   61 NEEREERRTL GLVLLRGEEV ISMTVEGPPP PEESRAKSGS VTAVAGPGIG RAAGRGVPTG 120
  121 PLVQAQPGLS GPVRGIGGPA PGMMQPQISR PPQIIRPPGQ MPPQPPFAGQ GGPPPPYGMR 180
  181 PPYPGPPPPQ YGGQQRPMMI PPPGGMMRGP PPPHGMQGPP PSRPGMPPPG GAPMFAPPHP 240
  241 GMPPAPPNHH NQQH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..97] PSI-BLAST 40.30103 B core SNRNP protein
    2 View Details [98..254] PSI-BLAST 5.39794 Sec24

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
    		• 9.36615441177233 bayes_pls_golite062009
  • RNA binding
    		•  5.81718051012035 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.69031444148163 bayes_pls_golite062009
  • mRNA binding
    		•  2.57166143288861 bayes_pls_golite062009
  • binding
    		•  2.04681172391952 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle