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Protein Overview: gi|7487754, gi|1...

General Information:
Name(s) found: gi|7487754 [NCBI NR]
gi|5541679 [NCBI NR]
gi|15232649 [NCBI NR]
Description(s) found:
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  • pir||T12968 hypothetical protein T6H20.170 - Arabidopsis thaliana [NCBI NR]
  • gi|5541679|emb|CAB51185.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15232649|ref|NP_190264.1| DC1 domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • (Q9STF4) Hypothetical protein [athaliana3702.FASTAC.txt]
  • putative protein [Arabidopsis thaliana]gi|7487754|pir||T12968 hypothetical protein T6H20.170 - Arabidopsis thalianagi|15232649|ref|NP_190264.1| DC1 domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 DC1 domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | DC1 domain-containing protein | chr3:17245479-17247527 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • protein binding / zinc ion binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Cysteine/Histidine-rich C1 domain family protein | chr3:17234494-17236542 REVERSE LENGTH=682 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Cysteine/histidine-rich C1 domain-containing protein OS=Arabidopsis thaliana GN=T6H20.170 PE=4 SV=1 [ARATH-contam.fasta]
  • Cysteine/Histidine-rich C1 domain family protein OS=Arabidopsis thaliana GN=T6H20.170 PE=4 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 682 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: intracellular signaling pathway [IEA]
    Molecular Function: zinc ion binding [IEA]
    protein binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKVELPVHE HPLFIFDRIC MDTCKGCSVF GYFYGGYVCN EVGCDTLFHK ECVESVPEIK  60
   61 HPSHPQHPLK LNLKCGRFCC SLCISGLQVG YHCSICDFNV HLVCARRPPS STSSSSSSSP 120
  121 LPTSVDNSKV HQHPLLLSKN VETFLLKEGR NCNMCNTNIK INEKQLCECR LCNILFHLDC 180
  181 VGLIPNVYQT SHPKHPLKFL QYGAPEYAHE KCLLCKKKFK KLSNNYDRVY HCDVCNVTIC 240
  241 KDYCMAKPPP VSVVSPTTHE HQLHLVPRLV NFTCNACGTA GDRSPYFCLQ CNFMIHRACI 300
  301 DLPRVININR HNHRISYTSL LGHGNWTCGV CRKKVDGFYG AYSCSKCPSY AVHARCATRK 360
  361 DVWYKVELEG TPEEEEIAPF EVVDENLIKH FIHGHNLRLN KDGNHESKFC EACASKINND 420
  421 PFYGCEQCDF ILHETCASLP RKIRHVSNNK PLILSTDTYL KDSPRQRRHC SACFQNFSGF 480
  481 RYETQSRNLF GSATLDVRCS SIYEPFLHES HPHPLYFSLE GDTKCSACDI TYSARDMLCC 540
  541 DECEFRLDFR CATLPRKVMN QRYDDHPLYL SYGENKEDGQ LWCEVCETKV DPKEWLYTCN 600
  601 LCGIILHISC VVGDFSYHVP GHISSNKIAN GVVVPNTSIC RPHCSRCSSR CKLPYILQIN 660
  661 DFYFCSNKCC GNTRNPRGRN YY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..190] PSI-BLAST 42.0 No description for 2i13A was found.
    2 View Details [191..370] FFAS03 2.27 Solution Structure of DC1 Domain of PDI-like Hypothetical Protein from Arabidopsis thaliana
    3 View Details [371..563] deduced N/A No confident structure predictions are available.
    4 View Details [564..682] PSI-BLAST 4.522879 Solution structures of the C2H2 type zinc finger domain of human Transcriptional repressor CTCF

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.0196698141692984 bayes_pls_golite062009
    3 No functions predicted.
    4
    Term Confidence Notes
  • binding
    		•  0.414217765611205 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle