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Protein Overview: gi|39545884, gi|...

General Information:
Name(s) found: gi|7270613 [NCBI NR]
gi|39545884 [NCBI NR]
gi|30102720 [NCBI NR]
gi|25407751 [NCBI NR]
gi|2464915 [NCBI NR]
gi|16509378 [NCBI NR]
gi|15234473 [NCBI NR]
Description(s) found:
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  • gi|7270613|emb|CAB80331.1| transcription initiation factor like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|39545884|gb|AAR28005.1| TFIIB5/pBrp [Arabidopsis thaliana] [NCBI NR]
  • gi|30102720|gb|AAP21278.1| At4g37010 [Arabidopsis thaliana] [NCBI NR]
  • pir||G85432 transcription initiation factor like protein [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|2464915|emb|CAB16810.1| transcription initiation factor like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|16509378|emb|CAC82714.1| TFIIB-related protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15234473|ref|NP_195383.1| ATPBRP (PLANT-SPECIFIC TFIIB-RELATED PROTEIN); RNA polymerase II transcription factor/ rDNA binding [Arabidopsis thaliana] [NCBI NR]
  • (O23215) Transcription initiation factor like protein (TFIIB-related protein) (At4g37010) [athaliana3702.FASTAC.txt]
  • TFIIB5/pBrp [Arabidopsis thaliana]gi|30102720|gb|AAP21278.1| At4g37010 [Arabidopsis thaliana]gi|2464915|emb|CAB16810.1| transcription initiation factor like protein [Arabidopsis thaliana]gi|16509378|emb|CAC82714.1| TFIIB-related protein [Arabidopsis th [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Transcription factor IIB (TFIIB) family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | transcription factor IIB (TFIIB) family protein | chr4:17283288-17285532 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • RNA polymerase II transcription factor/ transcription factor/ zinc ion binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • TFIIB-related protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • transcription initiation factor like protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • TFIIB5/pBrp [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At4g37010 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ATPBRP, PBRP | plant-specific TFIIB-related protein | chr4:17283283-17285527 REVERSE LENGTH=503 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At4g37010 OS=Arabidopsis thaliana GN=C7A10.710 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 503 amino acids

    Gene Ontology:
    Cellular Component: plastid outer membrane [IDA]
    Biological Process: regulation of transcription, DNA-dependent [IEA]
    transcription initiation [IEA]
    translational initiation [IEA]
    Molecular Function: RNA polymerase II transcription factor activity [ISS]
    rDNA binding [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKCPYCSSAQ GRCTTTSSGR SITECSSCGR VMEERQTQNH HLFHLRAQDT PLCLVTSDLQ  60
   61 TAAQPSPEDE EDPFEPTGFI TAFSTWSLEP SPIFARSSLS FSGHLAELER TLELASSTSN 120
  121 SNSSTVVVDN LRAYMQIIDV ASILGLDCDI SEHAFQLFRD CCSATCLRNR SVEALATACL 180
  181 VQAIREAQEP RTLQEISIAA NVQQKEIGKY IKILGEALQL SQPINSNSIS VHMPRFCTLL 240
  241 QLNKSAQELA THIGEVVINK CFCTRRNPIS ISAAAIYLAC QLEDKRKTQA EICKITGLTE 300
  301 VTLRKVYKEL LENWDDLLPS NYTPAVPPEK AFPTTTISTT RSTTPRAVDP PEPSFVEKDK 360
  361 PSAKPIETFD HTYQQPKGKE DKQPKFRQPW LFGTASVMNP AEMISEPAKP NAMDYEKQQL 420
  421 DKQQQQQLGD KETLPIYLRD HNPFPSNPSP STGISTINWS FRPSVVPGSS SNLPVIHPPK 480
  481 LPPGYAEIRG SGSRNADNPH GDF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..102] PSI-BLAST 12.30103 RDC-derived models of the zinc ribbon domain of human general transcription TFIIB (zinc bound structures)
    2 View Details [103..339] PSI-BLAST 35.69897 Transcription factor IIB (TFIIB), core domain
    3 View Details [340..503] MSA 34.210997 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle