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Protein Overview: NUCL1_ARATH

General Information:
Name(s) found: NUCL1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|28973759|gb|AAO64195.1| putative nucleolin [Arabidopsis thaliana] [NCBI NR]
  • pir||A96527 probable nuM1 protein [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15222009|ref|NP_175322.1| ATNUC-L1; nucleic acid binding / nucleotide binding [Arabidopsis thaliana] [NCBI NR]
  • gi|11094815|gb|AAG29744.1|AC084414_12 nuM1 protein, putative [Arabidopsis thaliana] [NCBI NR]
  • Nucleolin 1 OS=Arabidopsis thaliana GN=NUCL1 PE=1 SV=1 [Swiss-Prot]
  • (Q9FVQ1) NuM1 protein, putative (Putative nucleolin) [athaliana3702.FASTAC.txt]
  • putative nucleolin [Arabidopsis thaliana]gi|25405286|pir||A96527 probable nuM1 protein [imported] - Arabidopsis thalianagi|11094815|gb|AAG29744.1| nuM1 protein, putative [Arabidopsis thaliana]gi|15222009|ref|NP_175322.1| nucleolin, putative [Arabidopsi [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Nucleolin [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ATNUC-L1, PARL1 | ATNUC-L1/PARL1 (PARALLEL 1); nucleic acid binding | chr1:18101854-18105090 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • nuM1 protein, putative [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • nucleic acid binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative nucleolin [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like 1 | chr1:18098186-18101422 FORWARD LENGTH=557 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 557 amino acids

    Gene Ontology:
    Cellular Component: nucleolus [IDA]
    Biological Process: root development [IMP]
    shoot development [IMP]
    leaf development [IMP]
    petal vascular tissue pattern formation [IMP]
    sepal vascular tissue pattern formation [IMP]
    ribosome biogenesis [TAS]
    cotyledon vascular tissue pattern formation [IMP]
    leaf vascular tissue pattern formation [IMP]
    rRNA processing [IMP]
    endonucleolytic cleavage involved in rRNA processing [IMP]
    Molecular Function: nucleic acid binding [IEA][ISS]
    nucleotide binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKSKSATKV VAEIKATKPL KKGKREPEDD IDTKVSLKKQ KKDVIAAVQK EKAVKKVPKK  60
   61 VESSDDSDSE SEEEEKAKKV PAKKAASSSD ESSDDSSSDD EPAPKKAVAA TNGTVAKKSK 120
  121 DDSSSSDDDS SDEEVAVTKK PAAAAKNGSV KAKKESSSED DSSSEDEPAK KPAAKIAKPA 180
  181 AKDSSSSDDD SDEDSEDEKP ATKKAAPAAA KAASSSDSSD EDSDEESEDE KPAQKKADTK 240
  241 ASKKSSSDES SESEEDESED EEETPKKKSS DVEMVDAEKS SAKQPKTPST PAAGGSKTLF 300
  301 AANLSFNIER ADVENFFKEA GEVVDVRFST NRDDGSFRGF GHVEFASSEE AQKALEFHGR 360
  361 PLLGREIRLD IAQERGERGE RPAFTPQSGN FRSGGDGGDE KKIFVKGFDA SLSEDDIKNT 420
  421 LREHFSSCGE IKNVSVPIDR DTGNSKGIAY LEFSEGKEKA LELNGSDMGG GFYLVVDEPR 480
  481 PRGDSSGGGG FGRGNGRFGS GGGRGRDGGR GRFGSGGGRG RDGGRGRFGS GGGRGSDRGR 540
  541 GRPSFTPQGK KTTFGDE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..186] FFAS03 1.43 No description for 2j63A was found.
    2 View Details [187..291] PSI-BLAST 8.30103 No description for 2f3jA was found.
    3 View Details [292..485] PSI-BLAST 47.69897 Nuclear ribonucleoprotein A1 (RNP A1, UP1)
    4 View Details [486..557] FFAS03 1.94 Crystal structure of the C-terminal domain of BclA, the major antigen of the exosporium of the Bacillus anthracis spore.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle