| Protein: | NUCL1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 557 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUCL1_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
269.0 | [0..143] | [548..41] |
|
Region A: Residues: [1-186] |
1 11 21 31 41 51
| | | | | |
1 MGKSKSATKV VAEIKATKPL KKGKREPEDD IDTKVSLKKQ KKDVIAAVQK EKAVKKVPKK 60
61 VESSDDSDSE SEEEEKAKKV PAKKAASSSD ESSDDSSSDD EPAPKKAVAA TNGTVAKKSK 120
121 DDSSSSDDDS SDEEVAVTKK PAAAAKNGSV KAKKESSSED DSSSEDEPAK KPAAKIAKPA 180
181 AKDSSS
|
| Detection Method: |  |
| Confidence: | 1.43 |
| Match: | 2j63A |
| Description: | No description for 2j63A was found. |
|
Region A: Residues: [187-291] |
1 11 21 31 41 51
| | | | | |
1 SDDDSDEDSE DEKPATKKAA PAAAKAASSS DSSDEDSDEE SEDEKPAQKK ADTKASKKSS 60
61 SDESSESEED ESEDEEETPK KKSSDVEMVD AEKSSAKQPK TPSTP
|
| Detection Method: | |
| Confidence: | 8.30103 |
| Match: | 2f3jA |
| Description: | No description for 2f3jA was found. |
|
Region A: Residues: [292-485] |
1 11 21 31 41 51
| | | | | |
1 AAGGSKTLFA ANLSFNIERA DVENFFKEAG EVVDVRFSTN RDDGSFRGFG HVEFASSEEA 60
61 QKALEFHGRP LLGREIRLDI AQERGERGER PAFTPQSGNF RSGGDGGDEK KIFVKGFDAS 120
121 LSEDDIKNTL REHFSSCGEI KNVSVPIDRD TGNSKGIAYL EFSEGKEKAL ELNGSDMGGG 180
181 FYLVVDEPRP RGDS
|
| Detection Method: | |
| Confidence: | 47.69897 |
| Match: | 1l3kA |
| Description: | Nuclear ribonucleoprotein A1 (RNP A1, UP1) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.950788308762215 | bayes_pls_golite062009 |
| nucleic acid binding | 0.29562225149076 | bayes_pls_golite062009 |
|
Region A: Residues: [486-557] |
1 11 21 31 41 51
| | | | | |
1 SGGGGFGRGN GRFGSGGGRG RDGGRGRFGS GGGRGRDGGR GRFGSGGGRG SDRGRGRPSF 60
61 TPQGKKTTFG DE
|
| Detection Method: | |
| Confidence: | 1.94 |
| Match: | 1wckA |
| Description: | Crystal structure of the C-terminal domain of BclA, the major antigen of the exosporium of the Bacillus anthracis spore. |
Matching Structure (courtesy of the PDB): |
|
