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Protein Overview: RH16_ARATH

General Information:
Name(s) found: RH16_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|75337761|sp|Q9SW44.1|RH16_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 16 [NCBI NR]
  • pir||T10237 RNA helicase RH16 - Arabidopsis thaliana [NCBI NR]
  • gi|7270442|emb|CAB80208.1| RNA helicase (RH16) [Arabidopsis thaliana] [NCBI NR]
  • gi|5123708|emb|CAB45452.1| RNA helicase (RH16) [Arabidopsis thaliana] [NCBI NR]
  • gi|28394057|gb|AAO42436.1| putative DEAD/DEAH box RNA helicase protein [Arabidopsis thaliana] [NCBI NR]
  • gi|27754373|gb|AAO22635.1| putative DEAD/DEAH box RNA helicase protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15236218|ref|NP_195217.1| DEAD/DEAH box helicase, putative (RH16) [Arabidopsis thaliana] [NCBI NR]
  • DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis thaliana GN=RH16 PE=2 SV=1 [Swiss-Prot]
  • (Q9SW44) RNA helicase (RH16) [athaliana3702.FASTAC.txt]
  • RNA helicase (RH16) [Arabidopsis thaliana]gi|28394057|gb|AAO42436.1| putative DEAD/DEAH box RNA helicase protein [Arabidopsis thaliana]gi|5123708|emb|CAB45452.1| RNA helicase (RH16) [Arabidopsis thaliana]gi|27754373|gb|AAO22635.1| putative DEAD/DEAH bo [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 DEAD/DEAH box helicase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | DEAD/DEAH box helicase, putative (RH16) | chr4:16631666-16634839 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative DEAD/DEAH box RNA helicase protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • DEAD-box ATP-dependent RNA helicase 16 [nr-271106-contam.fasta]
  • RNA helicase (RH16) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:16631661-16634834 FORWARD LENGTH=626 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 626 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: NONE FOUND
    Molecular Function: nucleic acid binding [IEA]
    ATP binding [IEA]
    ATP-dependent helicase activity [IEA][ISS]
    helicase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKTKLKPVE DVNSEVVDEV EKAEEVEEQR NDREQEEEQK EEEAPKSFEE LGLDSRLIRA  60
   61 LTKKGIEKPT LIQQSAIPYI LEGKDVVARA KTGSGKTLAY LLPLLQKLFS ADSVSKKKLA 120
  121 PSAFILVPSR ELCQQVYTEV SSLIELCRVQ LKAVQLTSSM SASDMRNALA GLPEILVSTP 180
  181 ACIPKCFAAG VLEPTAVSES LSILVLDEAD LLLSYGYEDN LRSVTSIIPR RCQCLLMSAT 240
  241 TSSDVEKLKK LILHNPIVLT LTEDNDKEEA VPSNVQQFWI SCSAQDKLLH ILALLKLEVV 300
  301 QKKILIFINT IDMGFRLKLF LEKFGIKSAI LNGELPQNSR LHILEQFNAG LFDYLIATDD 360
  361 NSQTKKQKEE AKGEANKENK KNNKRSKPKL DAEFGVVRGI DFKKVHTVIN FDMPQSVTGY 420
  421 IHRIGRTGRA YSSGSSVSLI SPDEMEGFED IKSFLASDKN KDIDIITPFP LLTENAVESL 480
  481 RYRAEDVAKS VTKIAVRESR AQDLRNEIIN SEKLKAHFEA NPRDLDLLRH DKPLSKTAPA 540
  541 PHLKDIPEYL VDAKTQEASK MVKLARAAMG NTRRSGGGGG RNNKNKKRSR KGSDPLKTFN 600
  601 PNGSKRGAVG QKDGKDSSST KKQKTV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..469] PSI-BLAST 94.522879 No description for 2db3A was found.
    2 View Details [470..550] PSI-BLAST 10.69897 Nucleotide excision repair enzyme UvrB
    3 View Details [551..626] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle