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Protein Overview: gi|222423490, gi...

General Information:
Name(s) found: gi|79325195 [NCBI NR]
gi|7488342 [NCBI NR]
gi|7268840 [NCBI NR]
gi|5262167 [NCBI NR]
gi|30685110 [NCBI NR]
gi|28827492 [NCBI NR]
gi|28393634 [NCBI NR]
gi|238480869 [NCBI NR]
gi|222423490 [NCBI NR]
gi|15237095 [NCBI NR]
Description(s) found:
Found 19 descriptions.
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  • gi|79325195|ref|NP_001031682.1| smB (small nuclear ribonucleoprotein associated protein B) [Arabidopsis thaliana] [NCBI NR]
  • pir||T10586 small nuclear ribonucleoprotein-associated protein homolog F9F13.90 - Arabidopsis thaliana [NCBI NR]
  • gi|7268840|emb|CAB79044.1| putative snRNP protein [Arabidopsis thaliana] [NCBI NR]
  • gi|5262167|emb|CAB45810.1| putative snRNP protein [Arabidopsis thaliana] [NCBI NR]
  • gi|30685110|ref|NP_849414.1| smB (small nuclear ribonucleoprotein associated protein B) [Arabidopsis thaliana] [NCBI NR]
  • gi|28827492|gb|AAO50590.1| putative snRNP protein [Arabidopsis thaliana] [NCBI NR]
  • gi|28393634|gb|AAO42236.1| putative snRNP protein [Arabidopsis thaliana] [NCBI NR]
  • gi|238480869|ref|NP_001154258.1| smB (small nuclear ribonucleoprotein associated protein B) [Arabidopsis thaliana] [NCBI NR]
  • gi|222423490|dbj|BAH19715.1| AT4G20440 [Arabidopsis thaliana] [NCBI NR]
  • gi|15237095|ref|NP_193777.1| smB (small nuclear ribonucleoprotein associated protein B) [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 257 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ISS]
    Cajal body [IDA]
    small nucleolar ribonucleoprotein complex [ISS]
    nucleoplasm [IDA]
    Biological Process: nuclear mRNA splicing, via spliceosome [TAS]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMSKSSKML QFINYRMRVT IQDGRQLVGK FMAFDRHMNL VLGDCEEFRK LPPAKGKKIN  60
   61 EEREDRRTLG LVLLRGEEVI SMTVEGPPPP EESRAKAGSA AAVAGPGIGR AAGRGVPTGP 120
  121 LVQAQPGLSG PVRGVGGPAP GMMQPQISRP PQLSAPPIIR PPGQMLPPPP FGGQGPPMGR 180
  181 GPPPPYGMRP PPQQFSGPPP PQYGQRPMIP PPGGMMRGPP PPPHGMQGPP PPRPGMPPAP 240
  241 GGFAPPRPGM PPHNQQQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..93] PSI-BLAST 38.045757 B core SNRNP protein
    2 View Details [94..257] PSI-BLAST 3.69897 Sec24


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle