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Protein Overview: RD23C_ARATH

General Information:
Name(s) found: RD23C_ARATH [Swiss-Prot]
Description(s) found:
Found 18 descriptions.
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  • Ubiquitin receptor RAD23c OS=Arabidopsis thaliana GN=RAD23C PE=1 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 419 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: proteasomal ubiquitin-dependent protein catabolic process [IEA]
    protein modification process [IEA]
    nucleotide-excision repair [IEA]
    Molecular Function: proteasome binding [IDA]
    ubiquitin binding [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIFVKTLKG THFEIEVKPE DSVVDVKKNI ESVQGADVYP AAKQMLIHQG KVLKDETTIE  60
   61 ENKVAENSFI VIMMNKSKPA SAAASSASAG TSQAKSIPPS TSQPSISPQT PASVSAPVAP 120
  121 APTRPPPPAP TPTPAPVAAT ETVTTPIPEP VPATISSSTP APDSAPVGSQ GDVYGQAASN 180
  181 LAAGSNLEST IQQILDMGGG TWDRETVVLA LRAAFNNPER AVEYLYTGIP EQAEVPPVAR 240
  241 PPASAGQPAN PPAQTQQPAA APASGPNANP LDLFPQGLPN VGGNPGAGTL DFLRNSQQFQ 300
  301 ALRAMVQANP QVLQPMLQEL GKQNPNLMRL IQDHQADFLR LINEPVEGGG ESGNLLGQMA 360
  361 AGMPQPQAIQ VTHEEREAIE RLEAMGFERA LVLEVFFACN KNEELAANYL LDHMHEFEE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..419] PSI-BLAST 52.045757 Structure of the DNA repair protein hHR23a

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • damaged DNA binding
    		•  2.05780812338496 bayes_pls_golite062009
  • protein binding
    		•  0.897574980847268 bayes_pls_golite062009
  • binding
    		•  0.85419199411198 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle