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Protein Overview: VPS29_ARATH

General Information:
Name(s) found: VPS29_ARATH [Swiss-Prot]
Description(s) found:
Found 18 descriptions.
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  • Vacuolar protein sorting-associated protein 29 OS=Arabidopsis thaliana GN=VPS29 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 190 amino acids

    Gene Ontology:
    Cellular Component: retromer complex [IDA][ISS]
    membrane [IDA]
    microsome [IDA]
    multivesicular body [IDA]
    Biological Process: endosome to lysosome transport [ISS]
    protein targeting to vacuole [IMP]
    Molecular Function: protein serine/threonine phosphatase activity [ISS]
    hydrolase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLVLALGDL HVPHRAADLP PKFKSMLVPG KIQHIICTGN LCIKEIHDYL KTICPDLHIV  60
   61 RGEFDEDARY PENKTLTIGQ FKLGLCHGHQ VIPWGDLDSL AMLQRQLGVD ILVTGHTHQF 120
  121 TAYKHEGGVV INPGSATGAY SSINQDVNPS FVLMDIDGFR AVVYVYELID GEVKVDKIEF 180
  181 KKPPTTSSGP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..190] PSI-BLAST 41.221849 Crystal Structure Of human Vps29

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • hydrolase activity
    		•  2.15398287574737 bayes_pls_golite062009
  • protein transporter activity
    		•  1.31841400137462 bayes_pls_golite062009
  • transporter activity
    		•  1.24767072239634 bayes_pls_golite062009
  • phosphoric ester hydrolase activity
    		•  1.23826159413064 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  1.13357344565764 bayes_pls_golite062009
  • protein serine/threonine phosphatase activity
    		•  1.09206313505563 bayes_pls_golite062009
  • phosphatase activity
    		•  1.08894272596476 bayes_pls_golite062009
  • binding
    		•  1.0086165150304 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.783004917746429 bayes_pls_golite062009
  • phosphoprotein phosphatase activity
    		•  0.521298686118866 bayes_pls_golite062009
  • protein binding
    		•  0.306836734324834 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle