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Protein Overview: gi|28973738, gi|...

General Information:
Name(s) found: gi|29824263 [NCBI NR]
gi|28973738 [NCBI NR]
gi|15238671 [NCBI NR]
gi|110736902 [NCBI NR]
gi|10177892 [NCBI NR]
Description(s) found:
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  • gi|29824263|gb|AAP04092.1| putative microfibril-associated protein [Arabidopsis thaliana] [NCBI NR]
  • gi|28973738|gb|AAO64185.1| putative microfibril-associated protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15238671|ref|NP_197292.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|110736902|dbj|BAF00408.1| microfibril-associated protein - like [Arabidopsis thaliana] [NCBI NR]
  • gi|10177892|dbj|BAB11224.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • (Q9FKN6) Similarity to microfibrillar-associated protein 1 (Putative microfibril-associated protein) [athaliana3702.FASTAC.txt]
  • putative microfibril-associated protein [Arabidopsis thaliana]gi|10177892|dbj|BAB11224.1| unnamed protein product [Arabidopsis thaliana]gi|28973738|gb|AAO64185.1| putative microfibril-associated protein [Arabidopsis thaliana]gi|15238671|ref|NP_197292.1 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | similar to microfibrillar-associated protein-related [Arabidopsis thaliana] (TAIR:AT4G08580.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43282.1); contains InterPro domain Micro-fibrillar-associated 1, C-terminal; (InterPro [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative microfibril-associated protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • microfibril-associated protein - like [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | similar to microfibrillar-associated protein-related [Arabidopsis thaliana] (TAIR:AT4G08580.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43282.1); contains InterPro domain Micro-fibrillar-associated 1, C-terminal; (InterPro:IPR009730) | chr5:5925146-5926692 FORWARD [TAIR_A_Thaliana_na_04-12-2008_reversed.fasta]
  • | Symbols: | microfibrillar-associated protein-related | chr5:5925144-5926690 FORWARD LENGTH=435 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Microfibril-associated protein-like OS=Arabidopsis thaliana GN=At5g17900 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 435 amino acids

    Gene Ontology:
    Cellular Component: extracellular region [IEA]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVTAGVSES AIAVREKLKG GIGQTKVRRY WPGKAPEWAE EAEEDDDVRM QKVSVLDRAF  60
   61 PKNDDLGVAR KDDPRLRRLA KTKVENRDEV RADHRRIRQA EIIYTEEEES RNQENRDEDD 120
  121 DEDALEERRR RIREKNLRRA QEEAALLPLE EEDEIQEEEE EEEESEYETD SEDDMPGIAM 180
  181 IKPVFVPKAE RDTIAERERL EAEEEALEEL AKRKLEQRKL ETKQIVVEEV RKDEEIRKNI 240
  241 LLEEANIGDV ETDDELNEAE EYEVWKTREI GRIKRERDAR EAMLREREEI EKLRNMTEQE 300
  301 RRDWERKNPK PLSAQPKKKW NFMQKYYHKG AFFQADPDDE AGSAGTDGIF QRDFSAPTGE 360
  361 DRLDKSILPK VMQVKHFGRS GRTKWTHLVN EDTTDWSNPW TSNDPLREKY NKKMAGMDAP 420
  421 IAKPKGSKKM KDWES

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..337] PSI-BLAST 13.0 Heavy meromyosin subfragment
    2 View Details [338..435] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle