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Protein Overview: gi|28392947, gi|...

General Information:
Name(s) found: gi|28827690 [NCBI NR]
gi|28392947 [NCBI NR]
gi|25404963 [NCBI NR]
gi|15220511 [NCBI NR]
gi|11072013 [NCBI NR]
Description(s) found:
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  • gi|28827690|gb|AAO50689.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|28392947|gb|AAO41909.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • pir||B96700 protein F12A21.17 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15220511|ref|NP_176936.1| 7S RNA binding [Arabidopsis thaliana] [NCBI NR]
  • gi|11072013|gb|AAG28892.1|AC008113_8 F12A21.17 [Arabidopsis thaliana] [NCBI NR]
  • (Q9FXD4) F12A21.17 (Hypothetical protein) [athaliana3702.FASTAC.txt]
  • unknown protein [Arabidopsis thaliana]gi|28392947|gb|AAO41909.1| unknown protein [Arabidopsis thaliana]gi|25404963|pir||B96700 protein F12A21.17 [imported] - Arabidopsis thalianagi|11072013|gb|AAG28892.1| F12A21.17 [Arabidopsis thaliana]gi|15220511|re [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | 7S RNA binding | chr1:25369625-25372127 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • F12A21.17 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | SRP72 RNA-binding domain | chr1:25365962-25368464 REVERSE LENGTH=664 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • F12A21.17 OS=Arabidopsis thaliana GN=At1g67680 PE=2 SV=1 [ARATH-contam.fasta]
  • Signal recognition particle subunit SRP72 OS=Arabidopsis thaliana GN=At1g67680 PE=2 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 664 amino acids

    Gene Ontology:
    Cellular Component: signal recognition particle [IEA]
    Biological Process: SRP-dependent cotranslational protein targeting to membrane [IEA]
    Molecular Function: 7S RNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPKSKEKSK TSNSQPPPAI EDLFTSLHQH IKDTKYEEAV KVADQVLSIV PTDEDAIRCK  60
   61 VVALIKDDKF DDYLIKDVKI NGALSVINSF QKLPIDLGFH KAYCLYRVNK LDEALVCLKG 120
  121 LERDTDTLVL EAQILYRLGK ADACVDVYQK LTKSQIETLE VNLVAGLISA GKASQVQKTL 180
  181 ESLKIKPTSS FELAYNTACS LIENNNYADA EQLLLTARRI GQETLNDDDI ALTDEEIEIE 240
  241 LAPIAVQLAY VQQILGQTQE STSSYVDFIK RNLADEPSLA VAVNNLVALK GFKDISDGLR 300
  301 KFDLLKDKDS QTFQLSQALD AKLSQKHKEA IYANRVLLLL HANKMDQARE LCAALPGMFP 360
  361 ESIIPTLLQA AVLVRENKAA KAEELLGQCA EKFPEKSKLV LLARAQIAAS ASHPHVAAES 420
  421 LSKIPDIQHL PATVATIVAL KERAGDNDGA AAVLDSAIKW WSNSMTESSK LRVLMPEAAA 480
  481 FKLRHGQEEE ASRLYEEIVK NHNSTDALVG LVTTLARVNV EKAESYEKQL KPLPGLKAVD 540
  541 VDKLEKTYGA KPIEGAAASS SQEEVKKEKA KRKRKRKPKY PKGFDPANPG PPPDPERWLP 600
  601 RRERSSYKPK RKDKRAAQIR GSQGAVTKDK QEAAPSTSKS NQVASSKGNA PAPSSKASKK 660
  661 KSRR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..501] PSI-BLAST 29.045757 No description for 2gw1A was found.
    2 View Details [502..581] PSI-BLAST 18.69897 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
    3 View Details [582..664] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle