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Protein Overview: gi|8920577, gi|3...

General Information:
Name(s) found: gi|8920577 [NCBI NR]
gi|30387519 [NCBI NR]
gi|25518618 [NCBI NR]
gi|22655180 [NCBI NR]
gi|18394029 [NCBI NR]
gi|16648785 [NCBI NR]
Description(s) found:
Found 18 descriptions.
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  • gi|8920577|gb|AAF81299.1|AC027656_16 Strong similarity to a hypothetical protein At2g03640 gi|4406775 from Arabidopsis thaliana BAC T18C20 gb|AC006836. It contains a nuclear transport factor 2 (NTF2) domain PF|02136 [NCBI NR]
  • gi|30387519|gb|AAP31925.1| At1g13730 [Arabidopsis thaliana] [NCBI NR]
  • pir||F86270 hypothetical protein F21F23.16 - Arabidopsis thaliana [NCBI NR]
  • gi|22655180|gb|AAM98180.1| expressed protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18394029|ref|NP_563932.1| nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|16648785|gb|AAL25583.1| At1g13730/F21F23_12 [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 428 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEA]
    Biological Process: nucleocytoplasmic transport [ISS]
    transport [IEA]
    Molecular Function: nucleotide binding [IEA]
    nucleic acid binding [IEA]
    RNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALESNAPVV DPNTIGNSFV EKYYNLLYKS PSQVHQFYLD DSVLGRPGSD GEMVSVKSLK  60
   61 AINEQIMSFD YEISKIQILT ADSQASYMNG VVTLVTGLLT VKEGQRMRFS QSFFLVPLNG 120
  121 SYFVLNDVFR YVADEIVEPE ANKKEVEEVI PQVVQPTEQV DEVAEPVTIP TQQPEAKQTT 180
  181 ENTVKKPERA VANGHPKTQE DNVVNDKSNG VDAPKKSFAH IVQDLAQNGA TFNAKASPAK 240
  241 PKSKPVTKPS AARESKAPAP VSEHSSAATI DQQAEGYTIF VANLLMDATP EQLNETFKGF 300
  301 GAITKDGIQV RSYRLKGNCF GFVTFASAEA VKLVLQAHKE SAIRIGNRRV SIEEKRGNND 360
  361 NGRPAMRNGG YRNDNGYRND GYRPRGNGSN GGRGYGRNGS ERRGESRNGE AHNGDGKVHQ 420
  421 NGTVEASR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..147] PSI-BLAST 29.221849 Nuclear transport factor-2 (NTF2)
    2 View Details [148..428] PSI-BLAST 40.69897 Nuclear ribonucleoprotein A1 (RNP A1, UP1)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle