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Protein Overview: HS178_ARATH

General Information:
Name(s) found: HS178_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|8778561|gb|AAF79569.1|AC022464_27 F22G5.25 [Arabidopsis thaliana] [NCBI NR]
  • gi|28973039|gb|AAO63844.1| putative heat shock protein [Arabidopsis thaliana] [NCBI NR]
  • gi|26452709|dbj|BAC43437.1| putative heat shock protein [Arabidopsis thaliana] [NCBI NR]
  • gi|21555637|gb|AAM63903.1| heat shock protein, putative [Arabidopsis thaliana] [NCBI NR]
  • gi|15222395|ref|NP_172220.1| 17.8 kDa class I heat shock protein (HSP17.8-CI) [Arabidopsis thaliana] [NCBI NR]
  • 17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=1 SV=1 [Swiss-Prot]
  • (Q9LNW0) F22G5.25 (Heat shock protein, putative) [athaliana3702.FASTAC.txt]
  • heat shock protein, putative [Arabidopsis thaliana]gi|26452709|dbj|BAC43437.1| putative heat shock protein [Arabidopsis thaliana]gi|28973039|gb|AAO63844.1| putative heat shock protein [Arabidopsis thaliana]gi|8778561|gb|AAF79569.1| F22G5.25 [Arabidopsi [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 17.8 kDa class I heat shock protein (HSP17.8-CI) [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | 17.8 kDa class I heat shock protein (HSP17.8-CI) | chr1:2275145-2275618 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative heat shock protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • heat shock protein, putative [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • F22G5.25 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | HSP20-like chaperones superfamily protein | chr1:2275148-2275621 FORWARD LENGTH=157 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • 17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 157 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: response to oxidative stress [IEP]
    response to heat [ISS]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLIPSFFGN NRRSNSIFDP FSLDVWDPFK ELQFPSSLSG ETSAITNARV DWKETAEAHV  60
   61 FKADLPGMKK EEVKVEIEDD SVLKISGERH VEKEEKQDTW HRVERSSGQF SRKFKLPENV 120
  121 KMDQVKASME NGVLTVTVPK VEEAKKKAQV KSIDISG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..157] PSI-BLAST 30.154902 Small heat shock protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.20758866613061 bayes_pls_golite062009
  • catalytic activity
    		•  0.63074808892513 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle