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Protein Overview: gi|30017247, gi|...

General Information:
Name(s) found: gi|6730639 [NCBI NR]
gi|30017247 [NCBI NR]
gi|25404804 [NCBI NR]
gi|15222258 [NCBI NR]
gi|12325079 [NCBI NR]
Description(s) found:
Found 16 descriptions.
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  • gi|6730639|gb|AAF27060.1|AC008262_9 F4N2.20 [Arabidopsis thaliana] [NCBI NR]
  • gi|30017247|gb|AAP12857.1| At1g69250 [Arabidopsis thaliana] [NCBI NR]
  • pir||E96716 probable RNA-binding protein F23O10.17 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15222258|ref|NP_177085.1| nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|12325079|gb|AAG52488.1|AC018364_6 putative RNA-binding protein; 63745-61607 [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 427 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEA]
    Biological Process: nucleocytoplasmic transport [ISS]
    transport [IEA]
    Molecular Function: nucleotide binding [IEA]
    nucleic acid binding [IEA]
    RNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATEGVVPSA QDIAAEFVRQ YYHVLGQLPH EARRLYVDAS VVSRPDVTGT MMSFTSVEAI  60
   61 NKHILSCDFE NTKFEVLSVD SQNSLEDGIF IMVIGFMTGK DNQRRKFSQM FYLARQNTLV 120
  121 VLNDMLRYVD QEDSSTTETP CEPVTEIVRP ADGLKKAEKT ELKQKNVASV EKSVNAAVEK 180
  181 NAAPLDNGKM KQSEKAVITQ KVTEPDAAPQ PDGAKRSFAD IVGSMAKNAA PFQVKSPVQA 240
  241 PVQKPKYVGQ PRAAAAPQKP AYVSKSIKKN DQKVIEVPGT SIFVANLPLN AMPPQLFELF 300
  301 KDFGPIKENG IQVRSSRGNA NPVCFGFISF ETVASVQSVL QAAKNTPFML ADRKLRVKEK 360
  361 EVDYDGSKPS GKTKGGSNKT QNGSADSSKT ENGSADDSKT NGSAEDGEKE FKQVKSRRNR 420
  421 KKSEAAH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..133] PSI-BLAST 34.221849 Nuclear transport factor-2 (NTF2)
    2 View Details [134..427] PSI-BLAST 22.154902 Poly(A)-binding protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.62274725565825 bayes_pls_golite062009
  • protein binding
    		•  1.08686120820118 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  2.74264408627306 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.80545135721164 bayes_pls_golite062009
  • protein binding
    		•  0.86658006965634 bayes_pls_golite062009
  • RNA binding
    		•  0.734904190788389 bayes_pls_golite062009
  • mRNA binding
    		•  0.0823451064844403 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle