| Protein: | gi|30017247, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 427 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30017247, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
233.0 | [0..1] | [426..1] |
|
Region A: Residues: [1-133] |
1 11 21 31 41 51
| | | | | |
1 MATEGVVPSA QDIAAEFVRQ YYHVLGQLPH EARRLYVDAS VVSRPDVTGT MMSFTSVEAI 60
61 NKHILSCDFE NTKFEVLSVD SQNSLEDGIF IMVIGFMTGK DNQRRKFSQM FYLARQNTLV 120
121 VLNDMLRYVD QED
|
| Detection Method: |  |
| Confidence: | 34.221849 |
| Match: | 1a2kA |
| Description: | Nuclear transport factor-2 (NTF2) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.62274725565825 | bayes_pls_golite062009 |
| protein binding | 1.08686120820118 | bayes_pls_golite062009 |
|
Region A: Residues: [134-427] |
1 11 21 31 41 51
| | | | | |
1 SSTTETPCEP VTEIVRPADG LKKAEKTELK QKNVASVEKS VNAAVEKNAA PLDNGKMKQS 60
61 EKAVITQKVT EPDAAPQPDG AKRSFADIVG SMAKNAAPFQ VKSPVQAPVQ KPKYVGQPRA 120
121 AAAPQKPAYV SKSIKKNDQK VIEVPGTSIF VANLPLNAMP PQLFELFKDF GPIKENGIQV 180
181 RSSRGNANPV CFGFISFETV ASVQSVLQAA KNTPFMLADR KLRVKEKEVD YDGSKPSGKT 240
241 KGGSNKTQNG SADSSKTENG SADDSKTNGS AEDGEKEFKQ VKSRRNRKKS EAAH
|
| Detection Method: | |
| Confidence: | 22.154902 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.74264408627306 | bayes_pls_golite062009 |
| nucleic acid binding | 1.80545135721164 | bayes_pls_golite062009 |
| protein binding | 0.86658006965634 | bayes_pls_golite062009 |
| RNA binding | 0.734904190788389 | bayes_pls_golite062009 |
| mRNA binding | 0.0823451064844403 | bayes_pls_golite062009 |
