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Protein Overview: gi|28466881, gi|...

General Information:
Name(s) found: gi|7488341 [NCBI NR]
gi|7362764 [NCBI NR]
gi|42571273 [NCBI NR]
gi|30695679 [NCBI NR]
gi|30690747 [NCBI NR]
gi|28466881 [NCBI NR]
gi|145332931 [NCBI NR]
gi|110743879 [NCBI NR]
Description(s) found:
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  • pir||T00420 probable small nuclear ribonucleoprotein D2 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|7362764|emb|CAB83134.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|42571273|ref|NP_973710.1| small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative [Arabidopsis thaliana] [NCBI NR]
  • gi|30695679|ref|NP_567134.2| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|30690747|ref|NP_850477.1| small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative [Arabidopsis thaliana] [NCBI NR]
  • gi|28466881|gb|AAO44049.1| At2g47640 [Arabidopsis thaliana] [NCBI NR]
  • gi|145332931|ref|NP_001078331.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|110743879|dbj|BAE99774.1| putative small nuclear ribonucleoprotein D2 [Arabidopsis thaliana] [NCBI NR]
  • (O22247) Small nuclear ribonucleoprotein-like protein (At2g47640) [athaliana3702.FASTAC.txt]
  • At2g47640 [Arabidopsis thaliana]gi|7362764|emb|CAB83134.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]gi|7488341|pir||T00420 probable small nuclear ribonucleoprotein D2 [imported] - Arabidopsis thalianagi|30695679|ref|NP_567134. [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Small nuclear ribonucleoprotein D2 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative | chr2:19544463-19545501 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • | Symbols: | similar to small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative [Arabidopsis thaliana] (TAIR:AT2G47640.3); similar to small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, p [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana] [NCBI-RefSeq_human_na_10-15-2008_con_reversed.fasta]
  • putative small nuclear ribonucleoprotein D2 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At2g47640 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | similar to small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative [Arabidopsis thaliana] (TAIR:AT2G47640.3); similar to small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative [Arabidopsis thaliana] (TAIR:AT2G47640.2); similar to unknown [Picea sitchensis] (GB:ABK21523.1); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649); contains InterPro domain Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920) | chr3:23246702-23247590 REVERSE [TAIR_A_Thaliana_na_04-12-2008_reversed.fasta]
  • | Symbols: | Small nuclear ribonucleoprotein family protein | chr2:19537393-19538431 FORWARD LENGTH=108 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • | Symbols: | Small nuclear ribonucleoprotein family protein | chr3:23235727-23236615 REVERSE LENGTH=108 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At2g47640 OS=Arabidopsis thaliana GN=F26K9_270 PE=4 SV=1 [ARATH-contam.fasta]
  • Isoform of Q8RUH0, At2g47640 OS=Arabidopsis thaliana GN=F26K9_270 PE=2 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 108 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKPMEEDTN GKTEEEEFNT GPLSVLMMSV KNNTQVLINC RNNRKLLGRV RAFDRHCNMV  60
   61 LENVREMWTE VPKTGKGKKK ALPVNRDRFI SKMFLRGDSV IIVLRNPK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..108] PSI-BLAST 23.0 D2 core SNRNP protein


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle