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Protein Overview: MBD6_ARATH

General Information:
Name(s) found: MBD6_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|8885544|dbj|BAA97474.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • gi|28416643|gb|AAO42852.1| At5g59380 [Arabidopsis thaliana] [NCBI NR]
  • gi|15238389|ref|NP_200746.1| MBD6; DNA binding / DNA demethylase/ methyl-CpG binding [Arabidopsis thaliana] [NCBI NR]
  • gi|110743343|dbj|BAE99559.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis thaliana GN=MBD6 PE=1 SV=1 [Swiss-Prot]
  • (Q9LTJ1) Similarity to unknown protein (At5g59380) [athaliana3702.FASTAC.txt]
  • unnamed protein product [Arabidopsis thaliana]gi|28416643|gb|AAO42852.1| At5g59380 [Arabidopsis thaliana]gi|15238389|ref|NP_200746.1| methyl-CpG-binding domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Methyl-CpG-binding domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: MBD6 | MBD6 (methyl-CpG-binding domain 6); DNA binding | chr5:23969547-23970711 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • MBD6; DNA binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At5g59380 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • MBD6; DNA binding / DNA demethylase/ methyl-CpG binding [Arabidopsis thaliana] [NCBI-RefSeq_Human_na_04-23-2010_reversed.fasta]
  • | Symbols: MBD6, ATMBD6 | methyl-CPG-binding domain 6 | chr5:23952321-23953485 FORWARD LENGTH=225 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 225 amino acids

    Gene Ontology:
    Cellular Component: perinucleolar chromocenter [IDA]
    Biological Process: biological_process [ND]
    Molecular Function: DNA binding [ISS]
    [NOT]cytosine C-5 DNA demethylase activity [IDA]
    methyl-CpG binding [IDA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSVAGDFP PDPLLASGAF ISSAGDGTLD SSAKRRPIQG GIGISGSGES VRIGMANGTD  60
   61 QVNHQTESKS RKRAAPGDNW LPPGWRVEDK IRTSGATAGS VDKYYYEPNT GRKFRSRTEV 120
  121 LYYLEHGTSK RGTKKAENTY FNPDHFEGQG SNRVTRTATV PPPPPPPLDF DFKNPPDKVS 180
  181 WSMANAGEEG WIPNIGDVKV QDSVRRDWST AFTFITSRNP SKVSA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..225] PSI-BLAST 19.154902 Methyl-CpG-binding protein 2, MECP2

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.339357445627225 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle