YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: MD36B_ARATH

General Information:
Name(s) found: MD36B_ARATH [Swiss-Prot]
Description(s) found:
SHOW ONLY BEST
  • gi|9965751|gb|AAG10152.1| fibrillarin 1 [Arabidopsis thaliana] [NCBI NR]
  • gi|9965653|gb|AAG10103.1|AF233443_1 fibrillarin 1 [Arabidopsis thaliana] [NCBI NR]
  • gi|67461076|sp|Q9FEF8.1|FBRL1_ARATH RecName: Full=rRNA 2'-O-methyltransferase fibrillarin 1; AltName: Full=SKP1-interacting partner 7 [NCBI NR]
  • gi|30696189|ref|NP_568772.3| FIB1 (FIBRILLARIN 1); snoRNA binding [Arabidopsis thaliana] [NCBI NR]
  • gi|28416513|gb|AAO42787.1| AT5g52470/K24M7_22 [Arabidopsis thaliana] [NCBI NR]
  • gi|22654993|gb|AAM98088.1| AT5g52470/K24M7_22 [Arabidopsis thaliana] [NCBI NR]
  • gi|110740295|dbj|BAF02044.1| fibrillarin homolog [Arabidopsis thaliana] [NCBI NR]
  • gi|10177413|dbj|BAB10544.1| fibrillarin-like [Arabidopsis thaliana] [NCBI NR]
  • Probable mediator of RNA polymerase II transcription subunit 36b OS=Arabidopsis thaliana GN=MED36B PE=1 SV=1 [Swiss-Prot]
  • rRNA 2'-O-methyltransferase fibrillarin 1 OS=Arabidopsis thaliana GN=FIB1 PE=1 SV=1 [Swiss-Prot]
  • (Q9FEF8) Fibrillarin-like (Fibrillarin 1) (AT5g52470/K24M7_22) [athaliana3702.FASTAC.txt]
  • fibrillarin-like [Arabidopsis thaliana]gi|22654993|gb|AAM98088.1| AT5g52470/K24M7_22 [Arabidopsis thaliana]gi|28416513|gb|AAO42787.1| AT5g52470/K24M7_22 [Arabidopsis thaliana]gi|30696189|ref|NP_568772.3| fibrillarin 1 (FBR1) (FIB1) (SKIP7) [Arabidopsis [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Fibrillarin-1 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: FBR1, ATFIB1, ATFBR1, SKIP7, FIB1 | FIB1 (FIBRILLARIN 1) | chr5:21311516-21313735 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • fibrillarin-like [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • AT5g52470/K24M7_22 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • rRNA 2'-O-methyltransferase fibrillarin-1 (SKP1-interacting partner 7) [nr-271106-contam.fasta]
  • fibrillarin 1 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • fibrillarin homolog [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • FIB1 (FIBRILLARIN 1) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: FIB1, FBR1, ATFIB1, ATFBR1, SKIP7 | fibrillarin 1 | chr5:21294290-21296509 FORWARD LENGTH=308 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 308 amino acids

    Gene Ontology:
    Cellular Component: membrane [IDA]
    nucleolus [IDA][ISS]
    Biological Process: RNA methylation [IGI]
    rRNA processing [IGI]
    Molecular Function: snoRNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPPVTGGRG GGGFRGGRDG GGRGFGGGRS FGGGRSGDRG RSGPRGRGRG APRGRGGPPR  60
   61 GGMKGGSKVI VEPHRHAGVF IAKGKEDALV TKNLVPGEAV YNEKRISVQN EDGTKVEYRV 120
  121 WNPFRSKLAA AILGGVDNIW IKPGAKVLYL GAASGTTVSH VSDLVGPEGC VYAVEFSHRS 180
  181 GRDLVNMAKK RTNVIPIIED ARHPAKYRML VGMVDVIFSD VAQPDQARIL ALNASFFLKT 240
  241 GGHFVISIKA NCIDSTVAAE AVFQSEVKKL QQEQFKPAEQ VTLEPFERDH ACVVGGYRMP 300
  301 KKQKTPAS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..66] FFAS03 1.08 Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
    2 View Details [67..308] PSI-BLAST 54.522879 No description for 2ipxA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle