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View Structure Prediction Details

Protein: MD36B_ARATH
Organism: Arabidopsis thaliana
Length: 308 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MD36B_ARATH.

Description E-value Query
Range
Subject
Range
gi|48716513, gi|... - gi|50915968|ref|XP_468448.1| putative fibrillarin [Oryza sativa (japonica cultivar-group)], gi|48716...
gi|125541665 - gi|125541665|gb|EAY88060.1| hypothetical protein OsI_09490 [Oryza sativa Indica Group]
231.0 [0..63] [304..62]

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Predicted Domain #1
Region A:
Residues: [1-66]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPPVTGGRG GGGFRGGRDG GGRGFGGGRS FGGGRSGDRG RSGPRGRGRG APRGRGGPPR  60
   61 GGMKGG

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.08
Match: 1jchA
Description: Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [67-308]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKVIVEPHRH AGVFIAKGKE DALVTKNLVP GEAVYNEKRI SVQNEDGTKV EYRVWNPFRS  60
   61 KLAAAILGGV DNIWIKPGAK VLYLGAASGT TVSHVSDLVG PEGCVYAVEF SHRSGRDLVN 120
  121 MAKKRTNVIP IIEDARHPAK YRMLVGMVDV IFSDVAQPDQ ARILALNASF FLKTGGHFVI 180
  181 SIKANCIDST VAAEAVFQSE VKKLQQEQFK PAEQVTLEPF ERDHACVVGG YRMPKKQKTP 240
  241 AS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 54.522879
Match: 2ipxA
Description: No description for 2ipxA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle