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Protein Overview: BH083_ARATH

General Information:
Name(s) found: BH083_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|75308842|sp|Q9C707.1|BH083_ARATH RecName: Full=Transcription factor bHLH83; AltName: Full=Transcription factor EN 112; AltName: Full=bHLH transcription factor bHLH083; AltName: Full=Basic helix-loop-helix protein 83; Short=bHLH 83; Short=AtbHLH83 [NCBI NR]
  • gi|30023790|gb|AAP13428.1| At1g66470 [Arabidopsis thaliana] [NCBI NR]
  • pir||C96690 unknown protein F28G11.9 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|22135862|gb|AAM91513.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15219658|ref|NP_176820.1| basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|12322259|gb|AAG51154.1|AC074025_4 unknown protein [Arabidopsis thaliana] [NCBI NR]
  • Transcription factor bHLH83 OS=Arabidopsis thaliana GN=BHLH83 PE=2 SV=1 [Swiss-Prot]
  • (Q9C707) Hypothetical protein (At1g66470) [athaliana3702.FASTAC.txt]
  • At1g66470 [Arabidopsis thaliana]gi|22135862|gb|AAM91513.1| unknown protein [Arabidopsis thaliana]gi|25404624|pir||C96690 unknown protein F28G11.9 [imported] - Arabidopsis thalianagi|12322259|gb|AAG51154.1| unknown protein [Arabidopsis thaliana]gi|1521 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Basic helix-loop-helix (bHLH) family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | basic helix-loop-helix (bHLH) family protein | chr1:24798989-24800261 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • DNA binding / transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At1g66470 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: RHD6 | ROOT HAIR DEFECTIVE6 | chr1:24795326-24796598 FORWARD LENGTH=298 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 298 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IDA]
    Biological Process: root hair initiation [IMP]
    Molecular Function: DNA binding [ISS]
    transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALVNDHPNE TNYLSKQNSS SSEDLSSPGL DQPDAAYAGG GGGGGSASSS STMNSDHQQH  60
   61 QGFVFYPSGE DHHNSLMDFN GSSFLNFDHH ESFPPPAISC GGSSGGGGFS FLEGNNMSYG 120
  121 FTNWNHQHHM DIISPRSTET PQGQKDWLYS DSTVVTTGSR NESLSPKSAG NKRSHTGEST 180
  181 QPSKKLSSGV TGKTKPKPTT SPKDPQSLAA KNRRERISER LKILQELVPN GTKVDLVTML 240
  241 EKAISYVKFL QVQVKVLATD EFWPAQGGKA PDISQVKDAI DAILSSSQRD RNSNLITN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..133] MSA 2.319996 View MSA. No confident structure predictions are available.
    2 View Details [134..298] PSI-BLAST 19.0 Myc prot-oncogene protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  1.12507195426228 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.43204604575196 bayes_pls_golite062009
  • DNA binding
    		•  0.40884226851256 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.31759335140578 bayes_pls_golite062009
  • transcription factor activity
    		•  0.09721565916723 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle