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Protein Overview: DSK2B_ARATH

General Information:
Name(s) found: DSK2B_ARATH [Swiss-Prot]
Description(s) found:
Found 14 descriptions.
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  • Ubiquitin domain-containing protein DSK2b OS=Arabidopsis thaliana GN=DSK2B PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 551 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: protein modification process [IEA]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGEGDSSQP QSGEGEAVAV NIRCSNGTKF SVKTSLDSTV ESFKELVAQS SDVPANQQRL  60
   61 IYKGRILKDD QTLLSYGLQA DHTIHMVRGS APSSAPPPAP AASQTTAPSV TRGVGSDNSS 120
  121 NLGGASPGES LFPGLGFNPL GGGNAMSGLF GAGLPDLVQT QQQLAQNPNM IRDMMNTPAI 180
  181 QNLMNNPEFM RSMIMNNPQM RELVDRNPEL GHVLNDPSIL RQTLEAARNP ELMREMMRNT 240
  241 DRAMSNIESM PEGFNMLRRM YENVQEPLMN ATTMSGNAGN NTGSNPFAAL LGNQGVTTQG 300
  301 SDASNNSSTP NAGTGTIPNA NPLPNPWGAT GGQTTAPGRT NVGGDARSPG LGGLGGLGSL 360
  361 GGLGGLGMLG ADSPLGATPD ASQLSQLLQN PAISQMMQSV FSNPQYMNQL MSLNPQLRSM 420
  421 LDSNPQLREM MQNPDFLRQF SSPEMMQQMM TLQQSLSQNR NTASQDAGQT GAATGNNGGL 480
  481 DLLMNMFGSL GAGGLSGTNQ SNVPPEERYA TQLQQLQEMG FYDRAENIRA LLATNGNVNA 540
  541 AVERLLGSIG Q

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..88] PSI-BLAST 20.0 Solution Structure of S5a UIM-1/Ubiquitin Complex
    2 View Details [89..276] FFAS03 1.01 Structure of the DNA repair protein hHR23a
    3 View Details [277..342] deduced N/A No confident structure predictions are available.
    4 View Details [343..472] PSI-BLAST 5.522879 Sec24
    5 View Details [473..551] PSI-BLAST 8.09691 Solution Structure of RSGI RUH-016, a UBA Domain from mouse cDNA

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.0934358341245259 bayes_pls_golite062009
  • protein binding
    		•  0.03789551947602 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.79

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle