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Protein Overview: DAPF_ARATH

General Information:
Name(s) found: DAPF_ARATH [Swiss-Prot]
Description(s) found:
Found 16 descriptions.
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  • Diaminopimelate epimerase, chloroplastic OS=Arabidopsis thaliana GN=DAPF PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 362 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    Biological Process: lysine biosynthetic process via diaminopimelate [IEA]
    Molecular Function: diaminopimelate epimerase activity [IGI][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIAAVSTVS VAPQSRRVSN AFSRNLGSVS SLSFGFFEKE YCFKSPSLRV SAAASMDAVT  60
   61 AEKFSPASFL DKKETGVLHF VKYHGLGNDF ILVDNRDSSE PKITQEQAAK LCDRNFGVGA 120
  121 DGVIFAMPGV NGTDYAMRIF NSDGSEPEMC GNGVRCFARF IAELENLQGK HSFTIHTGAG 180
  181 LIVPEIQDDG QVKVDMGTPI LKAQDVPTKL SGNKGEAVVE AELVVDGVSW NVTCVSMGNP 240
  241 HCITFGKKGG PNLKVDDLNL PEIGPKFEHH EMFPARTNTE FVEVLSRSHL KMRVWERGAG 300
  301 ATLACGTGAC ALVVAAVLEG RADRKCTVDL PGGPLEIEWK QEDNHIYMTG PAEAVFYGSA 360
  361 LL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..362] PSI-BLAST 74.154902 Diaminopimelate epimerase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • diaminopimelate epimerase activity
    		•  4.22926504608084 bayes_pls_golite062009
  • amino-acid racemase activity
    		•  3.36270508746492 bayes_pls_golite062009
  • racemase and epimerase activity, acting on amino acids and derivatives
    		•  3.23874676534548 bayes_pls_golite062009
  • catalytic activity
    		•  1.37892559560737 bayes_pls_golite062009
  • racemase and epimerase activity
    		•  0.0469151339756061 bayes_pls_golite062009
  • isomerase activity
    		•  0.0304048110491 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.43

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle