Protein Overview: HRD1A_ARATH

General Information:
Name(s) found:	HRD1A_ARATH [Swiss-Prot]
Description(s) found: SHOW ONLY BEST	gi\|9294456\|dbj\|BAB02675.1\| unnamed protein product [Arabidopsis thaliana] [NCBI NR] gi\|66865930\|gb\|AAY57599.1\| RING finger family protein [Arabidopsis thaliana] [NCBI NR] gi\|26449418\|dbj\|BAC41836.1\| putative zinc finger protein [Arabidopsis thaliana] [NCBI NR] gi\|15233281\|ref\|NP_188230.1\| zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] [NCBI NR] ERAD-associated E3 ubiquitin-protein ligase HRD1A OS=Arabidopsis thaliana GN=HRD1A PE=2 SV=1 [Swiss-Prot] (Q9LW77) Similarity to zinc finger proteins (Putative zinc finger protein) [athaliana3702.FASTAC.txt] unnamed protein product [Arabidopsis thaliana]gi\|26449418\|dbj\|BAC41836.1\| putative zinc finger protein [Arabidopsis thaliana]gi\|15233281\|ref\|NP_188230.1\| zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas] Tax_Id=3702 Zinc finger (C3HC4-type RING finger) family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta] \| Symbols: \| zinc finger (C3HC4-type RING finger) family protein \| chr3:5456519-5458700 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta] RING finger family protein [Arabidopsis thaliana] [nr-271106-contam.fasta] protein binding / ubiquitin-protein ligase/ zinc ion binding [Arabidopsis thaliana] [nr-271106-contam.fasta] putative zinc finger protein [Arabidopsis thaliana] [nr-271106-contam.fasta] unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta] \| Symbols: \| RING/U-box superfamily protein \| chr3:5456513-5458694 FORWARD LENGTH=492 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta] Putative zinc finger protein OS=Arabidopsis thaliana GN=At3g16090/MSL1_13 PE=2 SV=1 [ARATH-contam.fasta]
Organism:	Arabidopsis thaliana
Length:	492 amino acids
Gene Ontology:
Cellular Component:	endomembrane system [IEA]
Biological Process:	NONE FOUND
Molecular Function:	zinc ion binding [IEA][ISS] protein binding [IEA][ISS]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRLRTYAGL SFMATLAVIY HAFSSRGQFY PATVYLSTSK ISLVLLLNMC LVLMLSLWHL  60
   61 VKFVFLGSLR EAEVERLNEQ AWRELMEILF AITIFRQDFS SGFLPLVVTL LLIKALHWLA 120
  121 QKRVEYIETT PSVSKLSHFR IVSFMGFLLL VDSLFMYSSI RHLIQSRQAS VSLFFSFEYM 180
  181 ILATTTVAIF VKYVFYVTDM LMDGQWEKKP VYTFYLELIR DLLHLSMYIC FFFVIFMNYG 240
  241 VPLHLLRELY ETFRNFQIRV SDYLRYRKIT SNMNDRFPDA TPEELTASDA TCIICREEMT 300
  301 NAKKLICGHL FHVHCLRSWL ERQQTCPTCR ALVVPPENAT SAAPGQRELH QGSQQGTSSS 360
  361 GNQGSEISSS AGVSNNSLSR HHARLQAAAS AASVYGKSMV YPSANTVAWS SGVPGTEQVS 420
  421 TEPDQTLPQH NLPVENSHAY ANMSETKLEE MRKSLETHLE ILRNRLHFLE TRKPESAGEP 480
  481 ENKGKSVADA AE

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..207]	MSA	2.251984	View MSA. No confident structure predictions are available.
2	View Details	[208..410]	PSI-BLAST	7.221849	No description for 2cklB was found.
3	View Details	[411..492]	MSA	1.537997	View MSA. No confident structure predictions are available.

Protein Overview: HRD1A_ARATH

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: