YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HRD1A_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRLRTYAGL SFMATLAVIY HAFSSRGQFY PATVYLSTSK ISLVLLLNMC LVLMLSLWHL  60
   61 VKFVFLGSLR EAEVERLNEQ AWRELMEILF AITIFRQDFS SGFLPLVVTL LLIKALHWLA 120
  121 QKRVEYIETT PSVSKLSHFR IVSFMGFLLL VDSLFMYSSI RHLIQSRQAS VSLFFSFEYM 180
  181 ILATTTVAIF VKYVFYVTDM LMDGQWEKKP VYTFYLELIR DLLHLSMYIC FFFVIFMNYG 240
  241 VPLHLLRELY ETFRNFQIRV SDYLRYRKIT SNMNDRFPDA TPEELTASDA TCIICREEMT 300
  301 NAKKLICGHL FHVHCLRSWL ERQQTCPTCR ALVVPPENAT SAAPGQRELH QGSQQGTSSS 360
  361 GNQGSEISSS AGVSNNSLSR HHARLQAAAS AASVYGKSMV YPSANTVAWS SGVPGTEQVS 420
  421 TEPDQTLPQH NLPVENSHAY ANMSETKLEE MRKSLETHLE ILRNRLHFLE TRKPESAGEP 480
  481 ENKGKSVADA AE

Type	Start	End	Confidence
Cytoplasmic	1	6	0.82
Transmembrane Helix	7	24	0.93
Non-Cytoplasmic	25	40	0.77
Transmembrane Helix	41	61	0.92
Cytoplasmic	62	98	0.79
Transmembrane Helix	99	118	0.85
Non-Cytoplasmic	119	137	0.77
Transmembrane Helix	138	160	0.87
Cytoplasmic	161	172	0.74
Transmembrane Helix	173	196	0.87
Non-Cytoplasmic	197	221	0.83
Transmembrane Helix	222	246	0.84
Cytoplasmic	247	492	0.83