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Protein Overview: gi|18399235, gi|...

General Information:
Name(s) found: gi|25084070 [NCBI NR]
gi|20197568 [NCBI NR]
gi|18399235 [NCBI NR]
gi|18252969 [NCBI NR]
Description(s) found:
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  • gi|25084070|gb|AAN72167.1| 50S ribosomal protein L4 [Arabidopsis thaliana] [NCBI NR]
  • gi|20197568|gb|AAD24390.2| 50S ribosomal protein L4 [Arabidopsis thaliana] [NCBI NR]
  • gi|18399235|ref|NP_565463.1| ribosomal protein L4 family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18252969|gb|AAL62411.1| 50S ribosomal protein L4 [Arabidopsis thaliana] [NCBI NR]
  • (Q8VY61) 50S ribosomal protein L4 [athaliana3702.FASTAC.txt]
  • 50S ribosomal protein L4 [Arabidopsis thaliana]gi|18252969|gb|AAL62411.1| 50S ribosomal protein L4 [Arabidopsis thaliana]gi|25084070|gb|AAN72167.1| 50S ribosomal protein L4 [Arabidopsis thaliana]gi|18399235|ref|NP_565463.1| ribosomal protein L4 family [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Ribosomal protein L4 family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | ribosomal protein L4 family protein | chr2:8666465-8668308 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • structural constituent of ribosome [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • 50S ribosomal protein L4 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Ribosomal protein L4/L1 family | chr2:8659384-8661227 FORWARD LENGTH=300 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • 50S ribosomal protein L4 OS=Arabidopsis thaliana GN=At2g20060 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 300 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IEA]
    large ribosomal subunit [ISS]
    ribosome [IEA]
    intracellular [IEA]
    Biological Process: translation [IEA][ISS]
    Molecular Function: structural constituent of ribosome [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASISRRIF RTFGSFSALG RSSSPNLSAN TSGNGLASLT NDLKYGMALL SNRKLSTSIL  60
   61 TPDDSFPSDL LTKKTVLTPD RTIGQYQDLV IPVTNFQNEE KGFMVLAGDV FDVPIRKDII 120
  121 HNVVRWQLAK RQQGTHSTKT LSEVSGTGRK PWNQKGTGRA RHGTLRGPQF RGGCVMHGPK 180
  181 PRSHAIKMNK QVRRLGLKIA LTARAAEGKL LVFDDLGLPT HKTKNIVNYY NQMENTKKVL 240
  241 VVEGGPIDEK LKLATQNLHY VNIIPSIGLN VYSILLHDTL LMSRDAVNKI VERMHTPINR 300
  301

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..85] deduced N/A No confident structure predictions are available.
    2 View Details [86..300] PSI-BLAST 66.69897 70S ribosome functional complex

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • structural constituent of ribosome
    		•  9.46714384821627 bayes_pls_golite062009
  • structural molecule activity
    		•  8.89019844429202 bayes_pls_golite062009
  • binding
    		•  1.20549540301208 bayes_pls_golite062009
  • protein binding
    		•  0.69049990447008 bayes_pls_golite062009
  • RNA binding
    		•  0.514741551458219 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.491336126355036 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle