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Protein Overview: GDI2_ARATH

General Information:
Name(s) found: GDI2_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|7019686|emb|CAB75811.1| Rab GDP dissociation inhibitor [Arabidopsis thaliana] [NCBI NR]
  • gi|2569936|emb|CAA04727.1| GDI2 [Arabidopsis thaliana] [NCBI NR]
  • gi|2446981|dbj|BAA22504.1| AtGDI2 [Arabidopsis thaliana] [NCBI NR]
  • gi|23197606|gb|AAN15330.1| Rab GDP dissociation inhibitor [Arabidopsis thaliana] [NCBI NR]
  • gi|19698845|gb|AAL91158.1| Rab GDP dissociation inhibitor [Arabidopsis thaliana] [NCBI NR]
  • gi|15232210|ref|NP_191551.1| ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2); RAB GDP-dissociation inhibitor [Arabidopsis thaliana] [NCBI NR]
  • pir||T47816 Rab GDP dissociation inhibitor - Arabidopsis thaliana [NCBI NR]
  • Guanosine nucleotide diphosphate dissociation inhibitor 2 OS=Arabidopsis thaliana GN=GDI2 PE=2 SV=1 [Swiss-Prot]
  • (O24653) GDI2 (Rab GDP dissociation inhibitor) [athaliana3702.FASTAC.txt]
  • Rab GDP dissociation inhibitor [Arabidopsis thaliana]gi|2569936|emb|CAA04727.1| GDI2 [Arabidopsis thaliana]gi|7019686|emb|CAB75811.1| Rab GDP dissociation inhibitor [Arabidopsis thaliana]gi|19698845|gb|AAL91158.1| Rab GDP dissociation inhibitor [Arabid [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Rab GDP dissociation inhibitor (GDI2) [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ATGDI2 | ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2); RAB GDP-dissociation inhibitor | chr3:22146134-22149198 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • Rab GDP dissociation inhibitor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • AtGDI2 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2); RAB GDP-dissociation inhibitor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • GDI2 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ATGDI2, GDI2 | RAB GDP dissociation inhibitor 2 | chr3:22135157-22138221 FORWARD LENGTH=444 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • AtGDI2 OS=Arabidopsis thaliana GN=AtGDI2 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 444 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: protein transport [IEA][ISS]
    regulation of GTPase activity [IEA]
    Molecular Function: Rab GDP-dissociation inhibitor activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEEYEVIVL GTGLKECILS GLLSVDGVKV LHMDRNDYYG GESTSLNLNQ LWKKFRGEEK  60
   61 APEHLGASRD YNVDMMPKFM MGNGKLVRTL IHTDVTKYLS FKAVDGSYVF VKGKVQKVPA 120
  121 TPMEALKSSL MGIFEKRRAG KFFSFVQEYD EKDPKTHDGM DLTRVTTKEL IAKYGLDGNT 180
  181 IDFIGHAVAL HTNDQHLDQP AFDTVMRMKL YAESLARFQG TSPYIYPLYG LGELPQAFAR 240
  241 LSAVYGGTYM LNKPECKVEF DEGGKVIGVT SEGETAKCKK IVCDPSYLPN KVRKIGRVAR 300
  301 AIAIMSHPIP NTNDSHSVQV IIPQKQLARK SDMYVFCCSY SHNVAPKGKF IAFVSTDAET 360
  361 DNPQTELKPG TDLLGPVDEI FFDMYDRYEP VNEPELDNCF ISTSYDATTH FETTVADVLN 420
  421 MYTLITGKQL DLSVDLSAAS AAEE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..444] PSI-BLAST 111.0 Crystal structure of the Rab effector guanine nucleotide dissociation inhibitor (GDI) in complex with a geranylgeranyl (GG) peptide

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • small GTPase regulator activity
    		•  1.82777033221452 bayes_pls_golite062009
  • GTPase regulator activity
    		•  1.69589677829425 bayes_pls_golite062009
  • nucleoside-triphosphatase regulator activity
    		•  1.67690582043816 bayes_pls_golite062009
  • binding
    		•  1.28745887296004 bayes_pls_golite062009
  • enzyme regulator activity
    		•  1.00883251592654 bayes_pls_golite062009
  • amine oxidase activity
    		•  0.93095855430028 bayes_pls_golite062009
  • GDP-dissociation inhibitor activity
    		•  0.387378304822822 bayes_pls_golite062009
  • protein binding
    		•  0.347133050347128 bayes_pls_golite062009
  • transporter activity
    		•  0.0442116448779152 bayes_pls_golite062009
  • antioxidant activity
    		•  0.0209903577090486 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.00424758775661527 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle