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Protein Overview: NFYC1_ARATH

General Information:
Name(s) found: NFYC1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|75266105|sp|Q9SMP0.1|NFYC1_ARATH RecName: Full=Nuclear transcription factor Y subunit C-1; Short=AtNF-YC-1; AltName: Full=Transcriptional activator HAP5A [NCBI NR]
  • gi|6523090|emb|CAB62348.1| transcription factor Hap5a [Arabidopsis thaliana] [NCBI NR]
  • gi|24899757|gb|AAN65093.1| transcription factor Hap5a [Arabidopsis thaliana] [NCBI NR]
  • gi|21554251|gb|AAM63326.1| transcription factor Hap5a [Arabidopsis thaliana] [NCBI NR]
  • gi|20260196|gb|AAM12996.1| transcription factor Hap5a [Arabidopsis thaliana] [NCBI NR]
  • gi|15228405|ref|NP_190428.1| NF-YC1 (NUCLEAR FACTOR Y, SUBUNIT C1); DNA binding / transcription activator/ transcription factor [Arabidopsis thaliana] [NCBI NR]
  • pir||T46203 transcription factor Hap5a - Arabidopsis thaliana [NCBI NR]
  • Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana GN=NFYC1 PE=1 SV=1 [Swiss-Prot]
  • (Q9SMP0) Transcription factor Hap5a [athaliana3702.FASTAC.txt]
  • transcription factor Hap5a [Arabidopsis thaliana]gi|6523090|emb|CAB62348.1| transcription factor Hap5a [Arabidopsis thaliana]gi|20260196|gb|AAM12996.1| transcription factor Hap5a [Arabidopsis thaliana]gi|11358886|pir||T46203 transcription factor Hap5a [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 CCAAT-box binding transcription factor Hap5a [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ATHAP5A, HAP5A | HAP5A (Heme activator protein (yeast) homolog 5A); DNA binding / transcription factor | chr3:18019878-18020923 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • HAP5A; DNA binding / transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • transcription factor Hap5a [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Nuclear transcription factor Y subunit C-1 (AtNF-YC-1) (Transcriptional activator HAP5A) [nr-271106-contam.fasta]
  • | Symbols: HAP5A, ATHAP5A, NF-YC1 | nuclear factor Y, subunit C1 | chr3:18008893-18009938 REVERSE LENGTH=234 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 234 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IC][IDA][ISS]
    CCAAT-binding factor complex [ISS]
    Biological Process: positive regulation of gene-specific transcription [IDA]
    regulation of transcription, DNA-dependent [ISS]
    Molecular Function: DNA binding [ISS]
    transcription factor activity [ISS]
    transcription activator activity [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTNNQQPPP SAAGIPPPPP GTTISAAGGG ASYHHLLQQQ QQQLQLFWTY QRQEIEQVND  60
   61 FKNHQLPLAR IKKIMKADED VRMISAEAPI LFAKACELFI LELTIRSWLH AEENKRRTLQ 120
  121 KNDIAAAITR TDIFDFLVDI VPRDEIKDEA AVLGGGMVVA PTASGVPYYY PPMGQPAGPG 180
  181 GMMIGRPAMD PNGVYVQPPS QAWQSVWQTS TGTGDDVSYG SGGSSGQGNL DGQG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..144] PSI-BLAST 18.69897 Nuclear transcription factor Y subunit gamma (Nf-Yc2)
    2 View Details [145..234] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.581886805340955 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.71

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle