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Protein Overview: KCS20_ARATH

General Information:
Name(s) found: KCS20_ARATH [Swiss-Prot]
Description(s) found:
Found 16 descriptions.
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  • 3-ketoacyl-CoA synthase 20 OS=Arabidopsis thaliana GN=KCS20 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 529 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEA]
    Biological Process: response to cold [IEP]
    response to light stimulus [IEP]
    Molecular Function: fatty acid elongase activity [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHNQNQPHR PVPVHVTNAE PNPNPNNLPN FLLSVRLKYV KLGYHYLISN ALYILLLPLL  60
   61 AATIANLSSF TINDLSLLYN TLRFHFLSAT LATALLISLS TAYFTTRPRR VFLLDFSCYK 120
  121 PDPSLICTRE TFMDRSQRVG IFTEDNLAFQ QKILERSGLG QKTYFPEALL RVPPNPCMEE 180
  181 ARKEAETVMF GAIDAVLEKT GVKPKDIGIL VVNCSLFNPT PSLSAMIVNK YKLRGNILSY 240
  241 NLGGMGCSAG LISIDLAKQM LQVQPNSYAL VVSTENITLN WYLGNDRSML LSNCIFRMGG 300
  301 AAVLLSNRSS DRSRSKYQLI HTVRTHKGAD DNAFGCVYQR EDNNAEETGK IGVSLSKNLM 360
  361 AIAGEALKTN ITTLGPLVLP MSEQLLFFAT LVARKVFKVK KIKPYIPDFK LAFEHFCIHA 420
  421 GGRAVLDEIE KNLDLSEWHM EPSRMTLNRF GNTSSSSLWY ELAYSEAKGR IKRGDRTWQI 480
  481 AFGSGFKCNS AVWKALRTID PMDEKTNPWI DEIDDFPVQV PRITPITSS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..529] PSI-BLAST 73.221849 Pyrone synthase (PyS, chalcone synthase 2)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.61499311836466 bayes_pls_golite062009
  • transferase activity
    		•  1.02674433736465 bayes_pls_golite062009
  • transferase activity, transferring acyl groups
    		•  0.95018443969363 bayes_pls_golite062009
  • transferase activity, transferring acyl groups other than amino-acyl groups
    		•  0.71137845857094 bayes_pls_golite062009
  • acyltransferase activity
    		•  0.57223728364314 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
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