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Protein Overview: U2AFB_ARATH

General Information:
Name(s) found: U2AFB_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|75334092|sp|Q9FMY5.1|U2AFB_ARATH RecName: Full=Splicing factor U2af small subunit B; AltName: Full=U2 small nuclear ribonucleoprotein auxiliary factor small subunit B; Short=U2 snRNP auxiliary factor small subunit B; AltName: Full=U2 auxiliary factor 3 [NCBI NR]
  • gi|42573547|ref|NP_974870.1| U2AF35B; RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding [Arabidopsis thaliana] [NCBI NR]
  • gi|23198022|gb|AAN15538.1| U2 snRNP auxiliary factor small subunit [Arabidopsis thaliana] [NCBI NR]
  • gi|22531195|gb|AAM97101.1| U2 snRNP auxiliary factor small subunit [Arabidopsis thaliana] [NCBI NR]
  • gi|15239067|ref|NP_199096.1| U2AF35B; RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding [Arabidopsis thaliana] [NCBI NR]
  • gi|10177285|dbj|BAB10638.1| U2 snRNP auxiliary factor, small subunit [Arabidopsis thaliana] [NCBI NR]
  • Splicing factor U2af small subunit B OS=Arabidopsis thaliana GN=U2AF35B PE=1 SV=1 [Swiss-Prot]
  • (Q9FMY5) U2 snRNP auxiliary factor, small subunit [athaliana3702.FASTAC.txt]
  • U2 snRNP auxiliary factor small subunit [Arabidopsis thaliana]gi|22531195|gb|AAM97101.1| U2 snRNP auxiliary factor small subunit [Arabidopsis thaliana]gi|15239067|ref|NP_199096.1| U2 snRNP auxiliary factor small subunit, putative [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 U2 snRNP auxiliary factor small subunit [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ATU2AF35B | ATU2AF35B; RNA binding | chr5:17187673-17188524 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • U2 snRNP auxiliary factor, small subunit [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • RNA binding / nucleic acid binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • U2 snRNP auxiliary factor small subunit [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • U2AF35B; RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding [Arabidopsis thaliana] [NCBI-RefSeq_Human_na_04-23-2010_reversed.fasta]
  • | Symbols: ATU2AF35B, U2AF35B | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr5:17170445-17171296 REVERSE LENGTH=283 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Splicing factor U2af small subunit B OS=Arabidopsis thaliana GN=U2AF35B PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 283 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: photoperiodism, flowering [IMP]
    Molecular Function: nucleic acid binding [IEA]
    nucleotide binding [IEA]
    zinc ion binding [IEA]
    RNA binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP  60
   61 GVDPQGQPLD PSKIQDHFED FYEDIFEELN KFGEVESLNV CDNLADHMIG NVYVLFKEED 120
  121 HAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQISREL 180
  181 RRKLFGRYRR SYRRGSRSRS RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD 240
  241 RDGGGRRRHG SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..159] PSI-BLAST 14.0 U2AF35 (35 KDa subunit)
    2 View Details [160..283] MSA 14.006997 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle