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Protein Overview: gi|18407449, gi|...

General Information:
Name(s) found: gi|23308341 [NCBI NR]
gi|20197308 [NCBI NR]
gi|18407449 [NCBI NR]
gi|15983390 [NCBI NR]
Description(s) found:
Found 13 descriptions.
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  • gi|23308341|gb|AAN18140.1| At2g47790/F17A22.18 [Arabidopsis thaliana] [NCBI NR]
  • gi|20197308|gb|AAC63654.2| expressed protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18407449|ref|NP_566111.1| transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15983390|gb|AAL11563.1|AF424569_1 At2g47790/F17A22.18 [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 392 amino acids

    Gene Ontology:
    Cellular Component: CUL4 RING ubiquitin ligase complex [ISS]
    Biological Process: biological_process [ND]
    Molecular Function: nucleotide binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEVSSEMEV EVQNRQLSDS SPAQNVKKFG LKNSIQTNFG SDYVFQIVPK IDWTAIAVSL  60
   61 STNTVKLYSP VTGQYYGECK GHSDTVNQIA FSSDSAASPH VLHSCSSDGT IRSWDTRSFQ 120
  121 QVSRIDTGND QEIFSFSYGG AADNLLAGGC KEQVLLWDWR NSKQVACLEE SHMDDVTQVH 180
  181 FVPNKPNKLL SASVDGLICL FNTEGDINDD DHLESVINVG TSIGKIGFLG DGYKKLWCLT 240
  241 HIETLSIWNW EDGSCEVNLE KARELASDSW TQDNVDYFVD CHCPGGEDLW VIGGTCAGTV 300
  301 GYFPVNYKQP GSIGTAEAIL GGGHIDVVRS VLQMPGEYGG AAGLFGWTGG EDGRLCCWKS 360
  361 DEDATEINRS WTSSELVVKP PRNRKKNRHS PY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..392] PSI-BLAST 71.69897 PAF-AH Holoenzyme: Lis1/Alfa2

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.98893547985644 bayes_pls_golite062009
  • protein binding
    		•  1.24173112731149 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  1.19378668895855 bayes_pls_golite062009
  • actin binding
    		•  0.273173420360236 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.118424942671137 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle