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Protein Overview: STA1_ARATH

General Information:
Name(s) found: STA1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|7270213|emb|CAB77828.1| putative pre-mRNA splicing factor [Arabidopsis thaliana] [NCBI NR]
  • gi|4206197|gb|AAD11585.1| putative pre-mRNA splicing factor [Arabidopsis thaliana] [NCBI NR]
  • pir||E85043 probable pre-mRNA splicing factor [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|23296408|gb|AAN13111.1| putative pre-mRNA splicing factor [Arabidopsis thaliana] [NCBI NR]
  • gi|16604551|gb|AAL24077.1| putative pre-mRNA splicing factor [Arabidopsis thaliana] [NCBI NR]
  • gi|15236308|ref|NP_192252.1| EMB2770 (EMBRYO DEFECTIVE 2770); RNA splicing factor, transesterification mechanism [Arabidopsis thaliana] [NCBI NR]
  • Protein STABILIZED1 OS=Arabidopsis thaliana GN=STA1 PE=1 SV=1 [Swiss-Prot]
  • (Q9ZT71) Putative pre-mRNA splicing factor [athaliana3702.FASTAC.txt]
  • putative pre-mRNA splicing factor [Arabidopsis thaliana]gi|16604551|gb|AAL24077.1| putative pre-mRNA splicing factor [Arabidopsis thaliana]gi|7270213|emb|CAB77828.1| putative pre-mRNA splicing factor [Arabidopsis thaliana]gi|4206197|gb|AAD11585.1| puta [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Pre-mRNA splicing factor-related [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: STA1, EMB2770 | EMB2770/STA1 (STABILIZED1); RNA splicing factor, transesterification mechanism | chr4:1517409-1520498 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative pre-mRNA splicing factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • EMB2770 (EMBRYO DEFECTIVE 2770); RNA splicing factor, transesterification mechanism [Arabidopsis thaliana] [NCBI-RefSeq_Human_na_04-23-2010_reversed.fasta]
  • | Symbols: STA1, EMB2770 | pre-mRNA splicing factor-related | chr4:1517411-1520500 REVERSE LENGTH=1029 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Pre-mRNA-processing factor 6 OS=Arabidopsis thaliana GN=F9H3.5 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 1029 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: response to cold [IMP]
    response to abiotic stimulus [IMP]
    nuclear mRNA splicing, via spliceosome [ISS]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFLSIPNGK TLSIDVNPNS TTISAFEQLA HQRSDVPQSF LRYSLRMRNP SRVFVDSKDS  60
   61 DSILLSDLGV SRFSTVIIHV LLLGGMQAAP PKPRLDFLNS KPPSNYVAGL GRGATGFTTR 120
  121 SDIGPARAAP DLPDRSALAT AAAPGVGRGA GKPSEAEAED DEEAEEKRYD ENQTFDEFEG 180
  181 NDVGLFANAE YDEDDKEADA IWESIDQRMD SRRKDRREAK LKEEIEKYRA SNPKITEQFA 240
  241 DLKRKLHTLS ADEWDSIPEI GDYSLRNKKK KFESFVPIPD TLLEKAKKEK ELVMALDPKS 300
  301 RAAGGSETPW GQTPVTDLTA VGEGRGTVLS LKLDNLSDSV SGQTVVDPKG YLTDLKSMKR 360
  361 TTDEEIYDRN RARLLYKSLT QSNPKNPNGW IAAARVEEVD GKIKAARFQI QRGCEECPKN 420
  421 EDVWLEACRL ANPEDAKGVI AKGVKLIPNS VKLWLEAAKL EHDVENKSRV LRKGLEHIPD 480
  481 SVRLWKAVVE LANEEDARIL LHRAVECCPL HLELWVALAR LETYAESKKV LNKAREKLPK 540
  541 EPAIWITAAK LEEANGKLDE ANDNTAMVGK IIDRGIKTLQ REGVVIDREN WMSEAEACER 600
  601 VGSVATCQAI IKNTIGIGVE EEDRKRTWVA DADECKKRGS IETARAIYAH ALSVFLTKKS 660
  661 IWLKAAQLEK SHGSRESLDA LLRKAVTYVP QAEVLWLMGA KEKWLAGDVP AARAILQEAY 720
  721 AAIPNSEEIW LAAFKLEFEN KEPERARMLL AKARERGGTE RVWMKSAIVE RELGNVEEER 780
  781 RLLNEGLKQF PTFFKLWLML GQLEERFKHL EQARKAYDTG LKHCPHCIPL WLSLADLEEK 840
  841 VNGLNKARAI LTTARKKNPG GAELWLAAIR AELRHDNKRE AEHLMSKALQ DCPKSGILWA 900
  901 ADIEMAPRPR RKTKSIDAMK KCDRDPHVTI AVAKLFWQDK KVEKARAWFE RAVTVGPDIG 960
  961 DFWALFYKFE LQHGSDEDRK EVVAKCVACE PKHGEKWQAI SKAVENAHQP IEVILKRVVN1020
 1021 ALSKEENSA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..102] deduced N/A No confident structure predictions are available.
    2 View Details [103..246] Pfam 65.408935 No description for PF06424.4 was found. No confident structure predictions are available.
    3 View Details [247..772] PSI-BLAST 10.522879 Clathrin D6 Coat
    4 View Details [773..856] PSI-BLAST 33.69897 No description for 2gw1A was found.
    5 View Details [857..922] PSI-BLAST 14.69897 No description for 2vq2A was found.
    6 View Details [923..1029] PSI-BLAST 68.154902 The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.79

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle