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Protein Overview: FIMB5_ARATH

General Information:
Name(s) found: FIMB5_ARATH [Swiss-Prot]
Description(s) found:
Found 16 descriptions.
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  • Fimbrin-5 OS=Arabidopsis thaliana GN=FIM5 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 687 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: actin binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSYVGVLVS DPWLQSQFTQ VELRTLKSKF VSNKTQLGRF TVGDLPPVFE KLKAFNGTID  60
   61 EDEIKSVLDK SYPNADDEVD FEFFLRAFLS VQARGVEKSG GSKGASSFLK TSTTTVHHAI 120
  121 NESEKASYVS HVNNYLRDDP FLKSYLPIDP ATNAFFDLVK DGVLLCKLIN VAVPGTIDER 180
  181 AINTKKTLNP WERNENLTLG LNSAKAIGCT VVNIGTQDIA EGRPYLVLGL ISQIIKIQML 240
  241 ADLNFKKTPS LFQLVDDTQD AEELMGLAPE KVLLKWMNFH LKKAGYEKQV TNFSSDLKDG 300
  301 EAYAYLLNAL APEHSTHVAL ETKDPTERAK KVLEQAEKLD CKRYLSPKDI VDGSANLNLA 360
  361 FVAQIFQHRN GLTVDDSKTS FAEMMTDDVE TSREERCFRL WINSLGTATY VNNVFEDLRN 420
  421 GWVLLEVLDK VSPGSVNWKH ANKPPIKMPF KKVENCNEVI KIGKELRFSL VNVAGNDIVQ 480
  481 GNKKLLLAFL WQLMRYTMLQ LLRNLRSHSQ GKEITDADIL NWANRKVKRG GRTSQADSFR 540
  541 DKNLSSGMFF LELLSAVEPR VVNWSLVTNG ETEEDKKLNA TYIISVARKL GCSIFLLPED 600
  601 IIEVNQKMML ILAASIMYWS LQQQSDTEST VSEDATDDGD ANSVAGEISN LSIDGASESS 660
  661 PTVQDQELLT KADNDEDEVD GENNKDA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..116] PSI-BLAST 22.69897 Structure of calmodulin bound to a calcineurin peptide: a new way of making an old binding mode
    2 View Details [117..623] PSI-BLAST 116.0 Crystal structure of the actin-crosslinking core of Arabidopsis fimbrin
    3 View Details [624..687] PSI-BLAST 68.69897 Cryo-EM Structure of Chicken Gizzard Smooth Muscle alpha-Actinin

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • actin binding
    		•  7.50245214720686 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  6.48140000563569 bayes_pls_golite062009
  • actin filament binding
    		•  5.47084878097979 bayes_pls_golite062009
  • tubulin binding
    		•  4.22039137964246 bayes_pls_golite062009
  • microtubule binding
    		•  4.15537672860167 bayes_pls_golite062009
  • binding
    		•  2.8655705697659 bayes_pls_golite062009
  • structural constituent of cytoskeleton
    		•  2.57886434162184 bayes_pls_golite062009
  • protein binding
    		•  2.36488136094907 bayes_pls_golite062009
  • microtubule plus-end binding
    		•  2.0465241878708 bayes_pls_golite062009
  • structural constituent of muscle
    		•  1.32485442580942 bayes_pls_golite062009
  • structural molecule activity
    		•  1.00964022808548 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle