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Protein Overview: UBP5_ARATH

General Information:
Name(s) found: UBP5_ARATH [Swiss-Prot]
Description(s) found:
Found 17 descriptions.
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  • Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana GN=UBP5 PE=1 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 924 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ISS]
    Biological Process: ubiquitin-dependent protein catabolic process [TAS]
    Molecular Function: ubiquitin-specific protease activity [IDA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEVSMGSSS SSTDLSPEEE RVFIRDIAIA AEANSKEGDT FYLITQRWWQ EWIEYVNQDQ  60
   61 PCNTNDGSSL SEHCDSPGSS TLKKPSRIDN SDLIYDSSLE DPSNTSEIIE TLQEGRDYVL 120
  121 LPQEVWNQLR SWYGGGPTLA RRVISSGLSQ TELAVEVYPL RLQLLLMPKS DHSAIRISKK 180
  181 ETIRELHRRA CEIFDLDSEH VRIWDYYGHQ KYSLMNDLDK TLDDANLQMD QDILVEVLDI 240
  241 NGTLSSAHIQ SAQENGLVDG DSTSILIEPS KSSLAAAGGF SSSRNAFRTG SVEVSQSFDN 300
  301 TYSSTGVTTR GSTAGLTGLL NLGNTCFMNS AIQCLVHTPE FASYFQEDYH QEINWQNPLG 360
  361 MVGELALAFG DLLRKLWAPG RTPIAPRPFK AKLARFAPQF SGYNQHDSQE LLAFLLDGLH 420
  421 EDLNRVKHKP YINSRDADGR PDEEVADEFW KNHIARNDSI IVDVCQGQYK STLVCPICNK 480
  481 VSVTFDPFMY LSLPLQFNTT RAITVTVFSC DKTALPSTIT VNVSKQGRCR DLIQALTNAC 540
  541 SLKQSEELKL AEIRNNFIHR LFEDPLIPLS SIKDDDHLAA YKLSKSSENT TLLRLVLRRR 600
  601 DQKAGEREST VQLKPCGTPL LSSASCGDAL TKGKIHCLVQ NMLSPFRREE SVGKKGNSDS 660
  661 SIPERRSARF NNTEEEDKVG GLKKAKKSNS SDLGASKLSL QLIDEDNKTI NLPDNEAEAM 720
  721 KLPSSATVTI YLDWTPELSG MYDITCLESL PEVLKYGPTT KKARSEPLSL YACLEAFLRE 780
  781 EPLVPDEMWF CPQCNERRQA SKKLDLWRLP EVLVIHLKRF SYSRSMKHKL ETFVNFPIHD 840
  841 LDLTKYVANK NLSQPQLYEL YALTNHYGGM GSGHYTAHIK LLDDSRWYNF DDSHISHINE 900
  901 DDVKSGAAYV LFYRRKSDAG GKMT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..98] PSI-BLAST 30.154902 Solution structure of the DUSP domain of hUSP15
    2 View Details [99..245] PSI-BLAST 5.0 No description for 2i50A was found.
    3 View Details [246..452] PSI-BLAST 65.69897 No description for 2gfoA was found.
    4 View Details [453..924] PSI-BLAST 47.39794 Crystal structure of HAUSP

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.67898130941709 bayes_pls_golite062009
  • protein binding
    		•  0.732160783930613 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle