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Protein Overview: gi|15237825, gi|...

General Information:
Name(s) found: gi|15237825 [NCBI NR]
gi|10176844 [NCBI NR]
Description(s) found:
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  • gi|15237825|ref|NP_197766.1| agenet domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|10176844|dbj|BAB10050.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • (Q9FFA3) Gb|AAC72114.1 [athaliana3702.FASTAC.txt]
  • unnamed protein product [Arabidopsis thaliana]gi|15237825|ref|NP_197766.1| agenet domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Agenet domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | agenet domain-containing protein | chr5:8014516-8016274 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • RNA binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 438 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: NONE FOUND
    Molecular Function: RNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSKHYRKFL RRLAEEPMFS PGTMVEVSSK INEGEVVWVP SMVIKEFKED DEYKYIVKDK  60
   61 SFSCEGKKAR PNKTVDLSSL RPIPVSVDEY QLEENVEVFL DGMGWRHGRV MGSQERAIGT 120
  121 LSQKWYFVRL ESTKKQLTFK QSDLRPLKVW EDGVWKVLQT RELSFTQGSG DKTGDSVRNA 180
  181 NESDPPLTPP PGIITPPLKQ IEAGTQRKAL SKKTLPRNQN GSGNDSTLEN ENSEDNNRKR 240
  241 KREENLGCVA SVEQDKPKDT TMVLPFEKKL RIWETLESME VFKTVPQSPH FSPLLVESRE 300
  301 DSREMSAVGM MLTFFGLLDE VKALQHNDPI SFFISLTNSF AELEKHGFNV KAPQSRINKL 360
  361 LSLRDRQSKK TEELKDAEKV TAEKESVKAE NKRKILELQR LNEEMDKEIA QSKSCAAKIV 420
  421 QQLDDVKLEF LATASAPW

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..102] FFAS03 1.37 No description for 2eqkA was found.
    2 View Details [103..168] PSI-BLAST 6.045757 Crystal structure of the EB1 C-terminal domain complexed with the CAP-Gly domain of p150Glued
    3 View Details [169..438] PSI-BLAST 8.09691 Heavy meromyosin subfragment


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle