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View Structure Prediction Details

Protein: gi|15237825, gi|...
Organism: Arabidopsis thaliana
Length: 438 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15237825, gi|....

Description E-value Query
Range
Subject
Range
gi|15237832, gi|... - gi|15237832|ref|NP_197769.1| agenet domain-containing protein [Arabidopsis thaliana], gi|10176847|db...
382.0 [0..3] [438..149]

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Predicted Domain #1
Region A:
Residues: [1-102]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSKHYRKFL RRLAEEPMFS PGTMVEVSSK INEGEVVWVP SMVIKEFKED DEYKYIVKDK  60
   61 SFSCEGKKAR PNKTVDLSSL RPIPVSVDEY QLEENVEVFL DG

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.37
Match: 2eqkA
Description: No description for 2eqkA was found.

Predicted Domain #2
Region A:
Residues: [103-168]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGWRHGRVMG SQERAIGTLS QKWYFVRLES TKKQLTFKQS DLRPLKVWED GVWKVLQTRE  60
   61 LSFTQG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.045757
Match: 1txqA
Description: Crystal structure of the EB1 C-terminal domain complexed with the CAP-Gly domain of p150Glued
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [169-438]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGDKTGDSVR NANESDPPLT PPPGIITPPL KQIEAGTQRK ALSKKTLPRN QNGSGNDSTL  60
   61 ENENSEDNNR KRKREENLGC VASVEQDKPK DTTMVLPFEK KLRIWETLES MEVFKTVPQS 120
  121 PHFSPLLVES REDSREMSAV GMMLTFFGLL DEVKALQHND PISFFISLTN SFAELEKHGF 180
  181 NVKAPQSRIN KLLSLRDRQS KKTEELKDAE KVTAEKESVK AENKRKILEL QRLNEEMDKE 240
  241 IAQSKSCAAK IVQQLDDVKL EFLATASAPW 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 8.09691
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle