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Protein Overview: SPT16_ARATH

General Information:
Name(s) found: SPT16_ARATH [Swiss-Prot]
Description(s) found:
Found 16 descriptions.
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  • FACT complex subunit SPT16 OS=Arabidopsis thaliana GN=SPT16 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 1074 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    FACT complex [IDA]
    nuclear euchromatin [IDA]
    nucleolus [IDA]
    Biological Process: cellular process [IEA]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADSRNGNAR APPSGVPPKA GNTYSIDVKN FISRARALYE HWKKHSADLW GSADALAIAT  60
   61 PPASDDLRYL KSSALNIWLL GYEFPDTIMV FTKKQIHFLC SRNKASLLEV VKKPAHDELK 120
  121 LDVIMHVKPK GDDGTGLMDA IFRAIRDLSR GDGNDSQVVG HIAREAPEGK LLETWTERLK 180
  181 NANFQFVDIT GGLSDLFAVK DDTEVMSVKK AAYLAYSVMK NVVVPNLESA IDEEKDVTHS 240
  241 ALMDLTEKAI LEPTKASVKL KPENVDICYP PIFQSGGKFD LKPSAASNDE LLTYDPASII 300
  301 ICAVGARYNS YCSNVARTYL IDATSLQSKA YEVLLKAHEA AIDALRSGRK INTVYQAALS 360
  361 VVEKNAPEFV DKLTKSAGTG IGLEFRESGL NINAKNDKVL RPKMAFNVSL GFQNLECESE 420
  421 SRSKNKKFSL LLADTVLVTD QKPELLTKCS KSVKDVAYSF KEDEEEEKPR KKARTSGSEN 480
  481 YITKTALRSD DHVVSKEELR KQHQAELARQ KNEETARRLA GDSSGAGDSR STAKTSADVV 540
  541 AYKNVNDMPH KELMIQVDTR NEAVLLPIYG SLVPFHVATI RTVSGNQDTN RNCYIRIIFN 600
  601 VPGTPFNPHD SNSLKNQGAI YLKEVSFRTK DSRHSSEVTQ QIKTLRRQVM ARESERAERA 660
  661 TLVTQEKLQL AGNKFKPLRL SELWIRPPFS GRKKIPGTLE AHANGFRYST TRPDERVDVL 720
  721 FANIKHAFFQ PAEKEMITLL HFHLHNHIMV GTKKTKDVQF YVEVMDVVQS LGGGRRSAYD 780
  781 PDEIDEEQRE RDRKNKINMD FNHFANRVND MWQLPQFASL DLEFDQPLRE LGFHGVPHKT 840
  841 SAFIIPTSSC LVELIEYPFL VVSLSEIEIV NLERVGFGQK NFDMAIIFKD FKKDVLRVDS 900
  901 VPTSSLEGIK EWLDTTDIKY YESKLNLNWR QILKTITDDP QSFIDDGGWE FLNLDGSDSE 960
  961 SGGSEESDKG YEPSDVEVES ESEDEASESE SLVESDDDEE EDSEQESEEE KGKTWDELER1020
 1021 EATNADREHG VESDSEEERK RRKMKAFGKS RPGTSGGGGS SSMKNMPPSK RKHR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..494] PSI-BLAST 63.045757 No description for 3cb5A was found.
    2 View Details [495..660] Pfam 18.455932 No description for PF08644.3 was found. No confident structure predictions are available.
    3 View Details [661..954] PSI-BLAST 57.154902 No description for 2gcjA was found.
    4 View Details [955..1074] MSA 3.080991 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle