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Protein Overview: FD4L1_ARATH

General Information:
Name(s) found: FD4L1_ARATH [Swiss-Prot]
Description(s) found:
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  • pir||D96648 hypothetical protein F19K23.12 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|2160143|gb|AAB60765.1| F19K23.12 gene product [Arabidopsis thaliana] [NCBI NR]
  • gi|15220724|ref|NP_176410.1| small conjugating protein ligase [Arabidopsis thaliana] [NCBI NR]
  • Fatty acid desaturase 4-like 1, chloroplastic OS=Arabidopsis thaliana GN=FAD4L1 PE=3 SV=1 [Swiss-Prot]
  • (O04584) F19K23.12 protein [athaliana3702.FASTAC.txt]
  • hypothetical protein F19K23.12 [imported] - Arabidopsis thalianagi|2160143|gb|AAB60765.1| F19K23.12 gene product [Arabidopsis thaliana]gi|15220724|ref|NP_176410.1| expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | small conjugating protein ligase | chr1:22984641-22985528 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • F19K23.12 gene product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Kua-ubiquitin conjugating enzyme hybrid localisation domain | chr1:22980976-22981863 FORWARD LENGTH=295 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • F19K23.12 protein OS=Arabidopsis thaliana GN=F19K23.12 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 295 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IEA]
    Biological Process: regulation of protein metabolic process [IEA]
    post-translational protein modification [IEA]
    Molecular Function: small conjugating protein ligase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVSFQTKNP LRPITNIPRS YGPTRVRVTC SVTTTNPQLN HENLVVEKRL VNPPLSKNND  60
   61 PTLQSTWTHR LWVAAGSTTI FASFAKSIIG GFGSHLWLQP ALACYAGYVF ADLGSGVYHW 120
  121 AIDNYGGAST PIVGAQLEAS QGHHKYPWTI TKRQFANNSY TIARAITFIV LPLNLAINNP 180
  181 LFHSFVSTFA FCILLSQQFH AWAHGTKSKL PPLVMALQDM GLLVSRKDHP GHHQAPYNSN 240
  241 YCVVSGAWNK VLDESNLFKA LEMALFFQFG VRPNSWNEPN SDWTEETETN FFTKI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..115] deduced N/A No confident structure predictions are available.
    2 View Details [116..295] MSA 5.030973 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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