YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FD4L1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVSFQTKNP LRPITNIPRS YGPTRVRVTC SVTTTNPQLN HENLVVEKRL VNPPLSKNND  60
   61 PTLQSTWTHR LWVAAGSTTI FASFAKSIIG GFGSHLWLQP ALACYAGYVF ADLGSGVYHW 120
  121 AIDNYGGAST PIVGAQLEAS QGHHKYPWTI TKRQFANNSY TIARAITFIV LPLNLAINNP 180
  181 LFHSFVSTFA FCILLSQQFH AWAHGTKSKL PPLVMALQDM GLLVSRKDHP GHHQAPYNSN 240
  241 YCVVSGAWNK VLDESNLFKA LEMALFFQFG VRPNSWNEPN SDWTEETETN FFTKI

Type	Start	End	Confidence
Cytoplasmic	1	70	0.82
Transmembrane Helix	71	90	0.80
Non-Cytoplasmic	91	100	0.49
Transmembrane Helix	101	122	0.59
Cytoplasmic	123	159	0.56
Transmembrane Helix	160	177	0.61
Non-Cytoplasmic	178	180	0.70
Transmembrane Helix	181	202	0.76
Cytoplasmic	203	295	0.83