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Protein Overview: DEAH2_ARATH

General Information:
Name(s) found: DEAH2_ARATH [Swiss-Prot]
Description(s) found:
Found 15 descriptions.
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  • Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 OS=Arabidopsis thaliana GN=At3g62310 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 726 amino acids

    Gene Ontology:
    Cellular Component: nucleolus [IDA]
    Biological Process: NONE FOUND
    Molecular Function: nucleic acid binding [IEA]
    ATP binding [IEA]
    RNA helicase activity [ISS]
    helicase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTERKRKIS LFDVMDDPSA PAKNAKTSGL PDGGINSLIN KWNGKPYSQR YYDILEKRRT  60
   61 LPVWLQKEEF LKTLNNNQTL ILVGETGSGK TTQIPQFVID AVDAETSDKR RKWLVGCTQP 120
  121 RRVAAMSVSR RVAEEMDVTI GEEVGYSIRF EDCSSPRTVL KYLTDGMLLR EAMADPLLER 180
  181 YKVIILDEAH ERTLATDVLF GLLKEVLKNR PDLKLVVMSA TLEAEKFQDY FSGAPLMKVP 240
  241 GRLHPVEIFY TQEPERDYLE AAIRTVVQIH MCEPPGDILV FLTGEEEIED ACRKINKEVG 300
  301 NLGDQVGPIK VVPLYSTLPP AMQQKIFDPA PEPVTEGGPP GRKIVVSTNI AETSLTIDGI 360
  361 VYVIDPGFAK QKVYNPRIRV ESLLVSPISK ASAHQRSGRA GRTRPGKCFR LYTEKSFNND 420
  421 LQPQTYPEIL RSNLANTVLT LKKLGIDDLV HFDFMDPPAP ETLMRALEVL NYLGALDDDG 480
  481 NLTKTGEIMS EFPLDPQMAK MLIVSPEFNC SNEILSVSAM LSVPNCFIRP REAQKAADEA 540
  541 KARFGHIEGD HLTLLNVYHA FKQNNEDPNW CYENFINNRA MKSADNVRQQ LVRIMSRFNL 600
  601 KMCSTDFNSR DYYINIRKAM LAGYFMQVAH LERTGHYLTV KDNQVVHLHP SNCLDHKPEW 660
  661 VIYNEYVLTS RNFIRTVTDI RGEWLVDVAS HYYDLSNFPN CEAKRVIEKL YKKREREKEE 720
  721 SKKNRK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..60] PSI-BLAST 63.69897 No description for 2j0qA was found.
    2 View Details [61..575] PSI-BLAST 24.0 No description for 2qeqA was found.
    3 View Details [576..726] Pfam 27.366532 No description for PF07717.7 was found. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle