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Protein Overview: gi|25289363, gi|...

General Information:
Name(s) found: gi|91806353 [NCBI NR]
gi|25289363 [NCBI NR]
gi|2281083 [NCBI NR]
gi|15224380 [NCBI NR]
Description(s) found:
Found 13 descriptions.
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  • gi|91806353|gb|ABE65904.1| polygalacturonase/pectinase [Arabidopsis thaliana] [NCBI NR]
  • pir||E84871 probable polygalacturonase [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|2281083|gb|AAB64019.1| putative polygalacturonase [Arabidopsis thaliana] [NCBI NR]
  • gi|15224380|ref|NP_181915.1| polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 384 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: carbohydrate metabolic process [IEA][ISS]
    Molecular Function: polygalacturonase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLLVLFVF FFISSCSAQS YNVLSFGAKP DGKTDATKAF MAVWQTACAS SRPVTIVVPK  60
   61 GRFLLRSVTF DGSKCKPKPV TFRIDGTLVA PADYRVIGNE DYWIFFQHLD GITVYGGVLD 120
  121 ARGASLWDCK KSGKNCPSGA TTIGFQSSSN VVVSGLTSLN SQMFHVVING CNNVKLQGVK 180
  181 VLAAGNSPNT DGIHVQSSSS VSIFNTKIST GDDCVSIGPG TNGLWIENVA CGPGHGISIG 240
  241 SLGKDSVESG VQNVTVKTVT FTGTDNGVRI KSWARPSSGF AKNIRFQHCV MNNVENPIII 300
  301 DQNYCPDHDC PRQVSGIKIS DVLFVDIHGT SATEVGVKLD CSSKKPCTGI RLEDVKLTYQ 360
  361 NKPAASACTH AGGIEAGFFQ PNCL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..384] PSI-BLAST 54.39794 Polygalacturonase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • polygalacturonase activity
    		•  3.63113788404352 bayes_pls_golite062009
  • catalytic activity
    		•  0.67288476528593 bayes_pls_golite062009
  • hydrolase activity
    		•  0.329563804802467 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle