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Protein Overview: gi|10178134, gi|...

General Information:
Name(s) found: gi|15239173 [NCBI NR]
gi|10178134 [NCBI NR]
Description(s) found:
Found 11 descriptions.
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  • gi|15239173|ref|NP_196176.1| transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|10178134|dbj|BAB11546.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 1124 amino acids

    Gene Ontology:
    Cellular Component: plasma membrane [IDA]
    Biological Process: vesicle-mediated transport [IEA]
    methylation [IEA]
    Molecular Function: nucleotide binding [ISS]
    nucleic acid binding [IEA]
    methyltransferase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVRKFLQKS SGGQNPPPPI APPPRGCLMA EDLDPHIITH SGIPSTASLL AFDPIQCLLA  60
   61 VGTLDGRIKV IGGDNIEAIL ASPKQLPFKN LEFMQNQGFL VSISNENEIQ VWDLDLRQPA 120
  121 SSLKWESNIT AFAILHGTGY MYVGDEYGMV SVLNYSADEG KLLQLPYYVP TDALSEAAGL 180
  181 SSPIDYPVVG LLSQPCSKGT RLLIAFSNGL LFLWDASEDH VVLVRGNKDL PVEGKTVADS 240
  241 LEASHDELSN LELDGKEISS LCWASTDGSV LAVGYVDGDI LFWDFSDGQK GKPSNHVVKL 300
  301 QLSSAEKRLP VIVMHWCLDV SRKSSGGKLF IYGGDIIGSD EVLTMLGLDW SSGMGGLKCV 360
  361 GRADLTLSGS FADMVLSPIA SSRQSGVFLF LLTNPGQLQA YDDTSLASLM SQKENKISVS 420
  421 PLPYPMVVPT MDPHMTVATF SALNVNDKTS LALSEIVLAA KARTPRTPSG ESAQWPLTGG 480
  481 VPSHVDDYKL ERLYMAGYQD GSMRIWDATY PCLSLIYILE PKASVIDITG VDASVTAFCF 540
  541 CSKTSCLAVG NECGMVRLYK LVGHTSGGTL EVVTNTEKKG LAIVTTLTLW ICYALSHAVG 600
  601 SLLVAHHLHQ EDGPQWLAAF SFLSSPVCTL QFVQSTRRLA VGFKCGKVAV LDIGVPSVLF 660
  661 VTNSLSDSGS PIKSLYVKSS SAPTGSKSDP TDHNSINSED DLLLCAMTKD GQTILLDGNT 720
  721 GKILASCLRP LKNPTAICMH IIENCYENYE TPSEKPAENP SGKDKHENKS HIIKASESHS 780
  781 PDGEQNAVTE TKLIDQIFAN SLFLMCSEDA LRLYTVKSLS QGSLESIMEV NLPRPCCWMG 840
  841 ILKKDGRECA VLLFYRTGHI EIRSFPNLEV VGESSLLSLL RWNFKPNMEK TVCSDDFGHV 900
  901 VLVNGCEVAI LSFLAHANGF RLPESLPLLH DKVLAAAADA TFSHISVHKK NHDGAPKFLS 960
  961 NIIKGFRSST EQKMDQVQDF SHLGNIFSNP PYLKPSDTGG DDEKIVELNI DDIEIDEPVI1020
 1021 ILPLTEKDKK EKKDKRTDKE KLFDGASSDA QPKTRTVDEI KSKYRKAGET SAIASQAKDK1080
 1081 LHERGEKLER ISQRTAELQD NAENFASMAH ELAKQMEKRK WWNI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..359] PSI-BLAST 62.69897 No description for 2ovpB was found.
    2 View Details [360..461] PSI-BLAST 3.522879 No description for 2ojhA was found.
    3 View Details [462..717] PSI-BLAST 5.0 TolB, C-terminal domain; TolB, N-terminal domain
    4 View Details [718..827] PSI-BLAST 73.154902 PAF-AH Holoenzyme: Lis1/Alfa2
    5 View Details [828..872] PSI-BLAST 22.30103 No description for 2pm9A was found.
    6 View Details [873..1124] PSI-BLAST 29.09691 No description for 2pm6B was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.72

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle