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View Structure Prediction Details

Protein: gi|10178134, gi|...
Organism: Arabidopsis thaliana
Length: 1124 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|10178134, gi|....

Predicted Domain #1
Region A:
Residues: [1-359]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVRKFLQKS SGGQNPPPPI APPPRGCLMA EDLDPHIITH SGIPSTASLL AFDPIQCLLA  60
   61 VGTLDGRIKV IGGDNIEAIL ASPKQLPFKN LEFMQNQGFL VSISNENEIQ VWDLDLRQPA 120
  121 SSLKWESNIT AFAILHGTGY MYVGDEYGMV SVLNYSADEG KLLQLPYYVP TDALSEAAGL 180
  181 SSPIDYPVVG LLSQPCSKGT RLLIAFSNGL LFLWDASEDH VVLVRGNKDL PVEGKTVADS 240
  241 LEASHDELSN LELDGKEISS LCWASTDGSV LAVGYVDGDI LFWDFSDGQK GKPSNHVVKL 300
  301 QLSSAEKRLP VIVMHWCLDV SRKSSGGKLF IYGGDIIGSD EVLTMLGLDW SSGMGGLKC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 62.69897
Match: 2ovpB
Description: No description for 2ovpB was found.

Predicted Domain #2
Region A:
Residues: [360-461]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VGRADLTLSG SFADMVLSPI ASSRQSGVFL FLLTNPGQLQ AYDDTSLASL MSQKENKISV  60
   61 SPLPYPMVVP TMDPHMTVAT FSALNVNDKT SLALSEIVLA AK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.522879
Match: 2ojhA
Description: No description for 2ojhA was found.

Predicted Domain #3
Region A:
Residues: [462-717]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ARTPRTPSGE SAQWPLTGGV PSHVDDYKLE RLYMAGYQDG SMRIWDATYP CLSLIYILEP  60
   61 KASVIDITGV DASVTAFCFC SKTSCLAVGN ECGMVRLYKL VGHTSGGTLE VVTNTEKKGL 120
  121 AIVTTLTLWI CYALSHAVGS LLVAHHLHQE DGPQWLAAFS FLSSPVCTLQ FVQSTRRLAV 180
  181 GFKCGKVAVL DIGVPSVLFV TNSLSDSGSP IKSLYVKSSS APTGSKSDPT DHNSINSEDD 240
  241 LLLCAMTKDG QTILLD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.0
Match: 1c5kA
Description: TolB, C-terminal domain; TolB, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [718-827]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNTGKILASC LRPLKNPTAI CMHIIENCYE NYETPSEKPA ENPSGKDKHE NKSHIIKASE  60
   61 SHSPDGEQNA VTETKLIDQI FANSLFLMCS EDALRLYTVK SLSQGSLESI 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 73.154902
Match: 1vyhC
Description: PAF-AH Holoenzyme: Lis1/Alfa2
Matching Structure (courtesy of the PDB):

Predicted Domain #5
Region A:
Residues: [828-872]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVNLPRPCC WMGILKKDGR ECAVLLFYRT GHIEIRSFPN LEVVG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 22.30103
Match: 2pm9A
Description: No description for 2pm9A was found.

Predicted Domain #6
Region A:
Residues: [873-1124]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESSLLSLLRW NFKPNMEKTV CSDDFGHVVL VNGCEVAILS FLAHANGFRL PESLPLLHDK  60
   61 VLAAAADATF SHISVHKKNH DGAPKFLSNI IKGFRSSTEQ KMDQVQDFSH LGNIFSNPPY 120
  121 LKPSDTGGDD EKIVELNIDD IEIDEPVIIL PLTEKDKKEK KDKRTDKEKL FDGASSDAQP 180
  181 KTRTVDEIKS KYRKAGETSA IASQAKDKLH ERGEKLERIS QRTAELQDNA ENFASMAHEL 240
  241 AKQMEKRKWW NI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.09691
Match: 2pm6B
Description: No description for 2pm6B was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle