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Protein Overview: gi|9757739, gi|1...

General Information:
Name(s) found: gi|9757739 [NCBI NR]
gi|21280941 [NCBI NR]
gi|15237393 [NCBI NR]
gi|14532588 [NCBI NR]
Description(s) found:
Found 13 descriptions.
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  • gi|9757739|dbj|BAB08264.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • gi|21280941|gb|AAM44907.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15237393|ref|NP_199431.1| KH domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|14532588|gb|AAK64022.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 644 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: biological_process [ND]
    Molecular Function: nucleic acid binding [ISS]
    RNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVERGKRTHN RFRDNNNDNN RNQRRRLSYE SEEKKIDNKD DLVVVYRILC PSGVMGSVIG  60
   61 KSGKVINLIR QETRARIKVV DPFPGCSERV ITIFCSVSEK KDIVDIEYSE LDYSVPLCSA 120
  121 QAALLKVHDA IVASLATAAE NTKIDRDDFR ECRLLVPSSQ CSIVIGKSGS IIKNIRGRTR 180
  181 ANVKVVSKDV SDPSHTCAMD FDNIVMISGE TESVKKALFA VSAIMYKVSP REQIPLDTTV 240
  241 QEVPASIIIP SDLSIYPQAG LYPSQDSIFQ HGANVSSFIG TLPQGYGENA ANPVPVFSAS 300
  301 ALPVVHGFGG SSRSEKLAIK VICSSSKIGR VIGKGGLTIK GIRQASGSHI EVNDSRTNHD 360
  361 DDCVITVTAT ESPDDLKSMA VEAVLLLQEK INDEDEDKVK MQLLVSSKVI GCIIGKSGSI 420
  421 ISEIRKRTKA DIHISKGNNT PKCADPNDEL VEISGEVSNV RDALIQIVLR LRDDVLRDRE 480
  481 TGSRNQPPAR SENNNFFSSS SSNTGLALPQ SFMSSVPQVA SVDFNRRPET GSSMSMLPSS 540
  541 GGIYGYGSFP VGNTSYGSNS SYSSNLYGGL PQSTTMEVRI PANAVGKVMG RGGGNLDNIR 600
  601 RISGAMIEIS DSKNSHGGRV ALISGTSEQK RTAENLFQAF IMST

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..198] PSI-BLAST 35.69897 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5
    2 View Details [199..392] FFAS03 3.13 Far upstream binding element, FBP, KH3 and KH4 domains
    3 View Details [393..493] PSI-BLAST 9.522879 Solution structure of the 12th KH type I domain from human Vigilin
    4 View Details [494..644] PSI-BLAST 17.0 HnRNP K, KH3

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.621176164202351 bayes_pls_golite062009
    3
    Term Confidence Notes
  • binding
    		•  0.766407798661875 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.1608635436815 bayes_pls_golite062009
  • RNA binding
    		•  0.0205643208063799 bayes_pls_golite062009
    4
    Term Confidence Notes
  • binding
    		•  0.766407798661875 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.1608635436815 bayes_pls_golite062009
  • RNA binding
    		•  0.0205643208063799 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle