| Protein: | gi|9757739, gi|1... |
| Organism: | Arabidopsis thaliana |
| Length: | 644 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9757739, gi|1....
| Description | E-value | Query Range |
Subject Range |
|
|
359.0 | [0..1] | [644..1] |
|
Region A: Residues: [1-198] |
1 11 21 31 41 51
| | | | | |
1 MVERGKRTHN RFRDNNNDNN RNQRRRLSYE SEEKKIDNKD DLVVVYRILC PSGVMGSVIG 60
61 KSGKVINLIR QETRARIKVV DPFPGCSERV ITIFCSVSEK KDIVDIEYSE LDYSVPLCSA 120
121 QAALLKVHDA IVASLATAAE NTKIDRDDFR ECRLLVPSSQ CSIVIGKSGS IIKNIRGRTR 180
181 ANVKVVSKDV SDPSHTCA
|
| Detection Method: |  |
| Confidence: | 35.69897 |
| Match: | 1e3hA |
| Description: | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [199-392] |
1 11 21 31 41 51
| | | | | |
1 MDFDNIVMIS GETESVKKAL FAVSAIMYKV SPREQIPLDT TVQEVPASII IPSDLSIYPQ 60
61 AGLYPSQDSI FQHGANVSSF IGTLPQGYGE NAANPVPVFS ASALPVVHGF GGSSRSEKLA 120
121 IKVICSSSKI GRVIGKGGLT IKGIRQASGS HIEVNDSRTN HDDDCVITVT ATESPDDLKS 180
181 MAVEAVLLLQ EKIN
|
| Detection Method: | |
| Confidence: | 3.13 |
| Match: | 1j4wA |
| Description: | Far upstream binding element, FBP, KH3 and KH4 domains |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.621176164202351 | bayes_pls_golite062009 |
|
Region A: Residues: [393-493] |
1 11 21 31 41 51
| | | | | |
1 DEDEDKVKMQ LLVSSKVIGC IIGKSGSIIS EIRKRTKADI HISKGNNTPK CADPNDELVE 60
61 ISGEVSNVRD ALIQIVLRLR DDVLRDRETG SRNQPPARSE N
|
| Detection Method: | |
| Confidence: | 9.522879 |
| Match: | 2ctkA |
| Description: | Solution structure of the 12th KH type I domain from human Vigilin |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.766407798661875 | bayes_pls_golite062009 |
| nucleic acid binding | 0.1608635436815 | bayes_pls_golite062009 |
| RNA binding | 0.0205643208063799 | bayes_pls_golite062009 |
|
Region A: Residues: [494-644] |
1 11 21 31 41 51
| | | | | |
1 NNFFSSSSSN TGLALPQSFM SSVPQVASVD FNRRPETGSS MSMLPSSGGI YGYGSFPVGN 60
61 TSYGSNSSYS SNLYGGLPQS TTMEVRIPAN AVGKVMGRGG GNLDNIRRIS GAMIEISDSK 120
121 NSHGGRVALI SGTSEQKRTA ENLFQAFIMS T
|
| Detection Method: | |
| Confidence: | 17.0 |
| Match: | 1j5kA |
| Description: | HnRNP K, KH3 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.766407798661875 | bayes_pls_golite062009 |
| nucleic acid binding | 0.1608635436815 | bayes_pls_golite062009 |
| RNA binding | 0.0205643208063799 | bayes_pls_golite062009 |
