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Protein Overview: ATL49_ARATH

General Information:
Name(s) found: ATL49_ARATH [Swiss-Prot]
Description(s) found:
Found 14 descriptions.
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  • Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana GN=ATL49 PE=3 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 423 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IEA]
    Biological Process: embryonic development ending in seed dormancy [IMP]
    Molecular Function: zinc ion binding [IEA][ISS]
    protein binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKILPEMKS TQNLISSSPP PPLIPLKSNT SLSNLNSKIT PNILLIIIIL SIIFFISGLL  60
   61 HILVKFLLTP SRESREDYFD NVTALQGQLQ QLFNLHDSGV DQSLIDTLPV FHYKSIVGLK 120
  121 ISPFDCPVCL CEFETEDKLR LLPKCSHAFH VECIDTWLLS HSTCPLCRSN LLSGFSSHHN 180
  181 LSSSYLLVLE SEQSSRDMVP VLESNSQLGY DVNNDSESTR IRSGRKSCDP DGDMDGLDEK 240
  241 VVPLEVKLGK FRNIDHVGEG SDQKKNSISG NSKNVDGRRC LSMGSYEYIM DQEATLKVHV 300
  301 STKKLSGKDR VPSHRTVMSE CGFDPTVKGI EKSVVERESF SLSKIWLRGK KEKQKGTSAR 360
  361 DSDCSFVSSS SLRFPNHRIP PEESLKSENS ESLETKTPSF ARRTMHWLAG RQNKIVQPST 420
  421 SNV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..114] deduced N/A No confident structure predictions are available.
    2 View Details [115..177] PSI-BLAST 15.30103 EL5 RING-H2 domain
    3 View Details [178..423] MSA 1.421993 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.0938889867773109 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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