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Protein Overview: HEM13_ARATH

General Information:
Name(s) found: HEM13_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|4432820|gb|AAD20670.1| putative glutamyl tRNA reductase [Arabidopsis thaliana] [NCBI NR]
  • pir||D84718 probable glutamyl tRNA reductase [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15224641|ref|NP_180683.1| HEMA3; NADP or NADPH binding / binding / catalytic/ glutamyl-tRNA reductase/ shikimate 5-dehydrogenase [Arabidopsis thaliana] [NCBI NR]
  • Probable glutamyl-tRNA reductase 3, chloroplastic OS=Arabidopsis thaliana GN=HEMA3 PE=3 SV=1 [Swiss-Prot]
  • (Q9SJX1) Putative glutamyl tRNA reductase [athaliana3702.FASTAC.txt]
  • putative glutamyl tRNA reductase [Arabidopsis thaliana]gi|15224641|ref|NP_180683.1| glutamyl-tRNA reductase, putative [Arabidopsis thaliana]gi|25286555|pir||D84718 probable glutamyl tRNA reductase [imported] - Arabidopsis thaliana [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Glutamyl-tRNA reductase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: HEMA3 | HEMA3; glutamyl-tRNA reductase | chr2:13326779-13328603 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • glutamyl-tRNA reductase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative glutamyl tRNA reductase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: HEMA3 | Glutamyl-tRNA reductase family protein | chr2:13319702-13321526 REVERSE LENGTH=524 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Glutamyl-tRNA reductase OS=Arabidopsis thaliana GN=HEMA3 PE=3 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 524 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IEA][ISS]
    cytoplasm [IEA]
    Biological Process: porphyrin biosynthetic process [TAS]
    Molecular Function: NADP or NADPH binding [IEA]
    catalytic activity [IEA]
    glutamyl-tRNA reductase activity [IEA][ISS]
    binding [IEA]
    shikimate 5-dehydrogenase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVSNASVVL SPNLETSSSW YHHNPSSSLD LIRIHTLPMN KMTRRGLIQR VRCETSPSSD  60
   61 SSPLDKLKNS PAIDRYTRER SSIVVIGLSF HTSPLEMRER LAIPEAEWPL AITQLCALNH 120
  121 IEEAAVLSTC NRIEIYVSAL SRYRGVKEVT EWMSKRSGIP VSDICQHRFL LYNKDATQHL 180
  181 FQVSAGLESL VIGENQIQSQ VRKAEQVVKQ EGFGRIISTL FEKANKAGKR VRAQTNIASG 240
  241 AVSVSSAAVE LALTKLPGSV SSAMMLVIGA GEMGKRIIEH LVAKGCTKMV VMNRSEDKVA 300
  301 AIRKEMQSGV EIIYKPLDEI LACAAEANVI FTSTSSETPL FLKEHVEILP PCPADYARLF 360
  361 VDISVPRNVG SCVAELDSAR VYNVDDLKEV VAANKEDRAR KSMEALPIIR EETIEFEGWR 420
  421 DSLQTFPTIR KLRSKTERIR AECVEKLISK HGNGMDKKTR EAVEKQTRII VNNILDYPMK 480
  481 HLRYDGTGSS KLRETLENMQ AVNRIYELDG ELLEEKIREK KDKK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..80] deduced N/A No confident structure predictions are available.
    2 View Details [81..524] PSI-BLAST 57.522879 Glutamyl tRNA-reductase dimerization domain; Glutamyl tRNA-reductase middle domain; Glutamyl tRNA-reductase catalytic, N-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • catalytic activity
    		•  1.79741889688267 bayes_pls_golite062009
  • oxidoreductase activity
    		•  0.881088609158401 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle