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Protein Overview: gi|15224383, gi|...

General Information:
Name(s) found: gi|7435396 [NCBI NR]
gi|67633606 [NCBI NR]
gi|3212847 [NCBI NR]
gi|15224383 [NCBI NR]
Description(s) found:
Found 13 descriptions.
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  • pir||T00669 probable polygalacturonase At2g43890 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|67633606|gb|AAY78727.1| putative polygalacturonase/pectinase [Arabidopsis thaliana] [NCBI NR]
  • gi|3212847|gb|AAC23398.1| putative polygalacturonase [Arabidopsis thaliana] [NCBI NR]
  • gi|15224383|ref|NP_181917.1| polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 392 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: carbohydrate metabolic process [IEA][ISS]
    Molecular Function: polygalacturonase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNNKLVAVL LMFFSSFLLM KSSTAASNYN VVSFGAKPDG RTDSTKAFLG AWQAACRSAA  60
   61 AVTVTVPRGS FLLKPVEFRG PCRSRITFQI YGTIVAPSDY RGLGNSGYWI LFVKVNRISI 120
  121 IGGTLDARGA SFWACRKSGK SCPVGARSMT FNWANDVVVS GLTSINSQTT HLVINSCNNV 180
  181 IVRKVKLVAP DQSPNTDGLH VQGSAGVTVT DGTFHTGDDC ISIGPGTRNL YMSKLNCGPG 240
  241 HGISIGSLGR DANEAGVENI TLINSVFSGS DNGVRIKTWA RQSTGFVRNV LFQNLIMKNV 300
  301 QNPIIVDQNY CPSNQGCPKQ GSGVKISQVV YRNIQGTSRT QQALTFDCSR SNPCQAIRLH 360
  361 DIKLTFNGRS ATSTCKNIKG VKAGVVMPQG CL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..392] PSI-BLAST 51.0 Polygalacturonase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • polygalacturonase activity
    		•  3.63113788404352 bayes_pls_golite062009
  • catalytic activity
    		•  0.67288476528593 bayes_pls_golite062009
  • hydrolase activity
    		•  0.329563804802467 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle